[HTML][HTML] How to rule the nucleus: divide et impera
I Solovei, K Thanisch, Y Feodorova - Current opinion in cell biology, 2016 - Elsevier
Genome-wide molecular studies have provided new insights into the organization of nuclear
chromatin by revealing the presence of chromatin domains of differing transcriptional …
chromatin by revealing the presence of chromatin domains of differing transcriptional …
Cohesin loss eliminates all loop domains
SSP Rao, SC Huang, BG St Hilaire, JM Engreitz… - Cell, 2017 - cell.com
The human genome folds to create thousands of intervals, called" contact domains," that
exhibit enhanced contact frequency within themselves." Loop domains" form because of …
exhibit enhanced contact frequency within themselves." Loop domains" form because of …
Decreased enhancer-promoter proximity accompanying enhancer activation
NS Benabdallah, I Williamson, RS Illingworth, L Kane… - Molecular cell, 2019 - cell.com
Enhancers can regulate the promoters of their target genes over very large genomic
distances. It is widely assumed that mechanisms of enhancer action involve the …
distances. It is widely assumed that mechanisms of enhancer action involve the …
A pliable mediator acts as a functional rather than an architectural bridge between promoters and enhancers
L El Khattabi, H Zhao, J Kalchschmidt, N Young… - Cell, 2019 - cell.com
While Mediator plays a key role in eukaryotic transcription, little is known about its
mechanism of action. This study combines CRISPR-Cas9 genetic screens, degron assays …
mechanism of action. This study combines CRISPR-Cas9 genetic screens, degron assays …
Hypoxic regulation of gene transcription and chromatin: cause and effect
JD Kindrick, DR Mole - International Journal of Molecular Sciences, 2020 - mdpi.com
Cellular responses to low oxygen (hypoxia) are fundamental to normal physiology and to the
pathology of many common diseases. Hypoxia-inducible factor (HIF) is central to this by …
pathology of many common diseases. Hypoxia-inducible factor (HIF) is central to this by …
Shh and ZRS enhancer colocalisation is specific to the zone of polarising activity
I Williamson, LA Lettice, RE Hill… - Development, 2016 - journals.biologists.com
Limb-specific Shh expression is regulated by the (∼ 1 Mb distant) ZRS enhancer. In the
mouse, limb bud-restricted spatiotemporal Shh expression occurs from∼ E10 to E11. 5 at …
mouse, limb bud-restricted spatiotemporal Shh expression occurs from∼ E10 to E11. 5 at …
Hit and run versus long-term activation of PARP-1 by its different domains fine-tunes nuclear processes
C Thomas, Y Ji, C Wu, H Datz… - Proceedings of the …, 2019 - National Acad Sciences
Poly (ADP-ribose) polymerase 1 (PARP-1) is a multidomain multifunctional nuclear enzyme
involved in the regulation of the chromatin structure and transcription. PARP-1 consists of …
involved in the regulation of the chromatin structure and transcription. PARP-1 consists of …
Allosteric conformational ensembles have unlimited capacity for integrating information
JW Biddle, R Martinez-Corral, F Wong, J Gunawardena - Elife, 2021 - elifesciences.org
Integration of binding information by macromolecular entities is fundamental to cellular
functionality. Recent work has shown that such integration cannot be explained by pairwise …
functionality. Recent work has shown that such integration cannot be explained by pairwise …
Phase separation and transcription regulation: are super‐enhancers and locus control regions primary sites of transcription complex assembly?
It is proposed that the multiple enhancer elements associated with locus control regions and
super‐enhancers recruit RNA polymerase II and efficiently assemble elongation competent …
super‐enhancers recruit RNA polymerase II and efficiently assemble elongation competent …
Multiomic analysis of cohesin reveals that ZBTB transcription factors contribute to chromatin interactions
R Wang, Q Xu, C Wang, K Tian, H Wang… - Nucleic Acids …, 2023 - academic.oup.com
One bottleneck in understanding the principles of 3D chromatin structures is caused by the
paucity of known regulators. Cohesin is essential for 3D chromatin organization, and its …
paucity of known regulators. Cohesin is essential for 3D chromatin organization, and its …