Computational prediction of RNA-binding proteins and binding sites
J Si, J Cui, J Cheng, R Wu - International journal of molecular sciences, 2015 - mdpi.com
Proteins and RNA interaction have vital roles in many cellular processes such as protein
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
synthesis, sequence encoding, RNA transfer, and gene regulation at the transcriptional and …
Prediction of Ubiquitination Sites by Using the Composition of k-Spaced Amino Acid Pairs
As one of the most important reversible protein post-translation modifications, ubiquitination
has been reported to be involved in lots of biological processes and closely implicated with …
has been reported to be involved in lots of biological processes and closely implicated with …
Target based drug design-a reality in virtual sphere
S Verma, Y S. Prabhakar - Current medicinal chemistry, 2015 - benthamdirect.com
The target based drug design approaches are a series of computational procedures,
including visualization tools, to support the decision systems of drug design/discovery …
including visualization tools, to support the decision systems of drug design/discovery …
RBPPred: predicting RNA-binding proteins from sequence using SVM
X Zhang, S Liu - Bioinformatics, 2017 - academic.oup.com
Motivation Detection of RNA-binding proteins (RBPs) is essential since the RNA-binding
proteins play critical roles in post-transcriptional regulation and have diverse roles in various …
proteins play critical roles in post-transcriptional regulation and have diverse roles in various …
ET-GRU: using multi-layer gated recurrent units to identify electron transport proteins
Background Electron transport chain is a series of protein complexes embedded in the
process of cellular respiration, which is an important process to transfer electrons and other …
process of cellular respiration, which is an important process to transfer electrons and other …
Computational Identification of Protein Pupylation Sites by Using Profile-Based Composition of k-Spaced Amino Acid Pairs
Prokaryotic proteins are regulated by pupylation, a type of post-translational modification
that contributes to cellular function in bacterial organisms. In pupylation process, the …
that contributes to cellular function in bacterial organisms. In pupylation process, the …
Insights into the fold organization of TIM barrel from interaction energy based structure networks
MS Vijayabaskar, S Vishveshwara - PLoS computational biology, 2012 - journals.plos.org
There are many well-known examples of proteins with low sequence similarity, adopting the
same structural fold. This aspect of sequence-structure relationship has been extensively …
same structural fold. This aspect of sequence-structure relationship has been extensively …
EPuL: an enhanced positive-unlabeled learning algorithm for the prediction of pupylation sites
Protein pupylation is a type of post-translation modification, which plays a crucial role in
cellular function of bacterial organisms in prokaryotes. To have a better insight of the …
cellular function of bacterial organisms in prokaryotes. To have a better insight of the …
Structure prediction and network analysis of chitinases from the Cape sundew, Drosera capensis
Background Carnivorous plants possess diverse sets of enzymes with novel functionalities
applicable to biotechnology, proteomics, and bioanalytical research. Chitinases constitute …
applicable to biotechnology, proteomics, and bioanalytical research. Chitinases constitute …
Outer membrane proteins can be simply identified using secondary structure element alignment
RX Yan, Z Chen, Z Zhang - BMC bioinformatics, 2011 - Springer
Abstract Background Outer membrane proteins (OMPs) are frequently found in the outer
membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found …
membranes of gram-negative bacteria, mitochondria and chloroplasts and have been found …