Selection signatures in livestock genome: A review of concepts, approaches and applications

KA Saravanan, M Panigrahi, H Kumar, B Bhushan… - Livestock Science, 2020 - Elsevier
Livestock populations have been consistently improving in terms of performance and
productivity by selective breeding over the centuries. These selection strategies are …

Genomic clues of the evolutionary history of Bos indicus cattle

YT Utsunomiya, M Milanesi, MRS Fortes… - Animal …, 2019 - Wiley Online Library
Together with their sister subspecies Bos taurus, zebu cattle (Bos indicus) have contributed
to important socioeconomic changes that have shaped modern civilizations. Zebu cattle …

Domestication of cattle: Two or three events?

D Pitt, N Sevane, EL Nicolazzi… - Evolutionary …, 2019 - Wiley Online Library
Cattle have been invaluable for the transition of human society from nomadic hunter‐
gatherers to sedentary farming communities throughout much of Europe, Asia and Africa …

How array design creates SNP ascertainment bias

J Geibel, C Reimer, S Weigend, A Weigend, T Pook… - PloS one, 2021 - journals.plos.org
Single nucleotide polymorphisms (SNPs), genotyped with arrays, have become a widely
used marker type in population genetic analyses over the last 10 years. However, compared …

On the origin of European sheep as revealed by the diversity of the Balkan breeds and by optimizing population-genetic analysis tools

E Ciani, S Mastrangelo, A Da Silva, F Marroni… - Genetics Selection …, 2020 - Springer
Abstract Background In the Neolithic, domestic sheep migrated into Europe and
subsequently spread in westerly and northwesterly directions. Reconstruction of these …

The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution

DK Malomane, H Simianer, A Weigend, C Reimer… - BMC genomics, 2019 - Springer
Background Since domestication, chickens did not only disperse into the different parts of
the world but they have also undergone significant genomic changes in this process. Many …

Modeling of African population history using f-statistics is biased when applying all previously proposed SNP ascertainment schemes

P Flegontov, U Işıldak, R Maier, E Yüncü… - PloS …, 2023 - journals.plos.org
f-statistics have emerged as a first line of analysis for making inferences about demographic
history from genome-wide data. Not only are they guaranteed to allow robust tests of the fits …

Applying genomic data in wildlife monitoring: Development guidelines for genotyping degraded samples with reduced single nucleotide polymorphism panels

A von Thaden, C Nowak, A Tiesmeyer… - Molecular ecology …, 2020 - Wiley Online Library
The genomic era has led to an unprecedented increase in the availability of genome‐wide
data for a broad range of taxa. Wildlife management strives to make use of these vast …

Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods

SJ du Plessis, M Blaxter, KP Koepfli… - Molecular Biology …, 2023 - academic.oup.com
Conservation genetic analyses of many endangered species have been based on
genotyping of microsatellite loci and sequencing of short fragments of mtDNA. The increase …

Genetic Diversity and Signatures of Selection for Thermal Stress in Cattle and Other Two Bos Species Adapted to Divergent Climatic Conditions

PHF Freitas, Y Wang, P Yan, HR Oliveira… - Frontiers in …, 2021 - frontiersin.org
Understanding the biological mechanisms of climatic adaptation is of paramount importance
for the optimization of breeding programs and conservation of genetic resources. The aim of …