The molecular basis for cellular function of intrinsically disordered protein regions

AS Holehouse, BB Kragelund - Nature Reviews Molecular Cell Biology, 2024 - nature.com
Intrinsically disordered protein regions exist in a collection of dynamic interconverting
conformations that lack a stable 3D structure. These regions are structurally heterogeneous …

[HTML][HTML] AlphaFold and implications for intrinsically disordered proteins

KM Ruff, RV Pappu - Journal of molecular biology, 2021 - Elsevier
Accurate predictions of the three-dimensional structures of proteins from their amino acid
sequences have come of age. AlphaFold, a deep learning-based approach to protein …

Intrinsically disordered protein regions and phase separation: sequence determinants of assembly or lack thereof.

EW Martin, AS Holehouse - Emerging topics in life sciences, 2020 - europepmc.org
Intrinsically disordered protein regions (IDRs)-regions that do not fold into a fixed three-
dimensional structure but instead exist in a heterogeneous ensemble of conformations-have …

Metapredict: a fast, accurate, and easy-to-use predictor of consensus disorder and structure

RJ Emenecker, D Griffith, AS Holehouse - Biophysical journal, 2021 - cell.com
Intrinsically disordered proteins and protein regions make up a substantial fraction of many
proteomes in which they play a wide variety of essential roles. A critical first step in …

Single-molecule FRET unmasks structural subpopulations and crucial molecular events during FUS low-complexity domain phase separation

A Joshi, A Walimbe, A Avni, SK Rai, L Arora… - Nature …, 2023 - nature.com
Biomolecular condensates formed via phase separation of proteins and nucleic acids are
thought to be associated with a wide range of cellular functions and dysfunctions. We dissect …

Sequence grammar underlying the unfolding and phase separation of globular proteins

KM Ruff, YH Choi, D Cox, AR Ormsby, Y Myung… - Molecular cell, 2022 - cell.com
Aberrant phase separation of globular proteins is associated with many diseases. Here, we
use a model protein system to understand how the unfolded states of globular proteins drive …

The structure of pathogenic huntingtin exon 1 defines the bases of its aggregation propensity

CA Elena-Real, A Sagar, A Urbanek… - Nature structural & …, 2023 - nature.com
Huntington's disease is a neurodegenerative disorder caused by a CAG expansion in the
first exon of the HTT gene, resulting in an extended polyglutamine (poly-Q) tract in huntingtin …

Connecting coil-to-globule transitions to full phase diagrams for intrinsically disordered proteins

X Zeng, AS Holehouse, A Chilkoti, T Mittag, RV Pappu - Biophysical journal, 2020 - cell.com
Phase separation is thought to underlie spatial and temporal organization that is required for
controlling biochemical reactions in cells. Multivalence of interaction motifs, also known as …

Pathologic polyglutamine aggregation begins with a self-poisoning polymer crystal

T Kandola, S Venkatesan, J Zhang, BT Lerbakken… - Elife, 2023 - elifesciences.org
A long-standing goal of amyloid research has been to characterize the structural basis of the
rate-determining nucleating event. However, the ephemeral nature of nucleation has made …

Therapeutics—how to treat phase separation-associated diseases

RJ Wheeler - Emerging Topics in Life Sciences, 2020 - portlandpress.com
Liquid–liquid phase separation has drawn attention as many neurodegeneration or cancer-
associated proteins are able to form liquid membraneless compartments (condensates) by …