Spatial proteomics: a powerful discovery tool for cell biology

E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves

DJ Collins, B Morahan, J Garcia-Bustos… - Nature …, 2015 - nature.com
In single-cell analysis, cellular activity and parameters are assayed on an individual, rather
than population-average basis. Essential to observing the activity of these cells over time is …

DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning

JB Lugagne, H Lin, MJ Dunlop - PLoS computational biology, 2020 - journals.plos.org
Microscopy image analysis is a major bottleneck in quantification of single-cell microscopy
data, typically requiring human oversight and curation, which limit both accuracy and …

Unification of protein abundance datasets yields a quantitative Saccharomyces cerevisiae proteome

B Ho, A Baryshnikova, GW Brown - Cell systems, 2018 - cell.com
Protein activity is the ultimate arbiter of function in most cellular pathways, and protein
concentration is fundamentally connected to protein action. While the proteome of yeast has …

Automated analysis of high‐content microscopy data with deep learning

OZ Kraus, BT Grys, J Ba, Y Chong, BJ Frey… - Molecular systems …, 2017 - embopress.org
Existing computational pipelines for quantitative analysis of high‐content microscopy data
rely on traditional machine learning approaches that fail to accurately classify more than a …

Malonyl-CoA is a conserved endogenous ATP-competitive mTORC1 inhibitor

R Nicastro, L Brohée, J Alba, J Nüchel, G Figlia… - Nature Cell …, 2023 - nature.com
Cell growth is regulated by the mammalian/mechanistic target of rapamycin complex 1
(mTORC1), which functions both as a nutrient sensor and a master controller of virtually all …

Yeast proteome dynamics from single cell imaging and automated analysis

YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox… - Cell, 2015 - cell.com
Proteomics has proved invaluable in generating large-scale quantitative data; however, the
development of systems approaches for examining the proteome in vivo has lagged behind …

Experimental design, population dynamics, and diversity in microbial experimental evolution

B Van den Bergh, T Swings, M Fauvart… - … and Molecular Biology …, 2018 - Am Soc Microbiol
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …

Microbioreactor systems for accelerated bioprocess development

J Hemmerich, S Noack, W Wiechert… - Biotechnology …, 2018 - Wiley Online Library
In recent years, microbioreactor (MBR) systems have evolved towards versatile bioprocess
engineering tools. They provide a unique solution to combine higher experimental …