Spatial proteomics: a powerful discovery tool for cell biology
E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …
Two-dimensional single-cell patterning with one cell per well driven by surface acoustic waves
DJ Collins, B Morahan, J Garcia-Bustos… - Nature …, 2015 - nature.com
In single-cell analysis, cellular activity and parameters are assayed on an individual, rather
than population-average basis. Essential to observing the activity of these cells over time is …
than population-average basis. Essential to observing the activity of these cells over time is …
DeLTA: Automated cell segmentation, tracking, and lineage reconstruction using deep learning
Microscopy image analysis is a major bottleneck in quantification of single-cell microscopy
data, typically requiring human oversight and curation, which limit both accuracy and …
data, typically requiring human oversight and curation, which limit both accuracy and …
Unification of protein abundance datasets yields a quantitative Saccharomyces cerevisiae proteome
Protein activity is the ultimate arbiter of function in most cellular pathways, and protein
concentration is fundamentally connected to protein action. While the proteome of yeast has …
concentration is fundamentally connected to protein action. While the proteome of yeast has …
Automated analysis of high‐content microscopy data with deep learning
Existing computational pipelines for quantitative analysis of high‐content microscopy data
rely on traditional machine learning approaches that fail to accurately classify more than a …
rely on traditional machine learning approaches that fail to accurately classify more than a …
Malonyl-CoA is a conserved endogenous ATP-competitive mTORC1 inhibitor
R Nicastro, L Brohée, J Alba, J Nüchel, G Figlia… - Nature Cell …, 2023 - nature.com
Cell growth is regulated by the mammalian/mechanistic target of rapamycin complex 1
(mTORC1), which functions both as a nutrient sensor and a master controller of virtually all …
(mTORC1), which functions both as a nutrient sensor and a master controller of virtually all …
Yeast proteome dynamics from single cell imaging and automated analysis
YT Chong, JLY Koh, H Friesen, SK Duffy, MJ Cox… - Cell, 2015 - cell.com
Proteomics has proved invaluable in generating large-scale quantitative data; however, the
development of systems approaches for examining the proteome in vivo has lagged behind …
development of systems approaches for examining the proteome in vivo has lagged behind …
Experimental design, population dynamics, and diversity in microbial experimental evolution
In experimental evolution, laboratory-controlled conditions select for the adaptation of
species, which can be monitored in real time. Despite the current popularity of such …
species, which can be monitored in real time. Despite the current popularity of such …
Microbioreactor systems for accelerated bioprocess development
J Hemmerich, S Noack, W Wiechert… - Biotechnology …, 2018 - Wiley Online Library
In recent years, microbioreactor (MBR) systems have evolved towards versatile bioprocess
engineering tools. They provide a unique solution to combine higher experimental …
engineering tools. They provide a unique solution to combine higher experimental …