Molecular‐clock methods for estimating evolutionary rates and timescales

SYW Ho, S Duchêne - Molecular ecology, 2014 - Wiley Online Library
The molecular clock presents a means of estimating evolutionary rates and timescales using
genetic data. These estimates can lead to important insights into evolutionary processes and …

Bayesian molecular clock dating of species divergences in the genomics era

M Dos Reis, PCJ Donoghue, Z Yang - Nature Reviews Genetics, 2016 - nature.com
Five decades have passed since the proposal of the molecular clock hypothesis, which
states that the rate of evolution at the molecular level is constant through time and among …

Fast dating using least-squares criteria and algorithms

TH To, M Jung, S Lycett, O Gascuel - Systematic biology, 2016 - academic.oup.com
Phylogenies provide a useful way to understand the evolutionary history of genetic samples,
and data sets with more than a thousand taxa are becoming increasingly common, notably …

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

M dos Reis, J Inoue, M Hasegawa… - … of the Royal …, 2012 - royalsocietypublishing.org
The fossil record suggests a rapid radiation of placental mammals following the Cretaceous–
Paleogene (K–Pg) mass extinction 65 million years ago (Ma); nevertheless, molecular time …

Phylogenetic and phylogenomic overview of the Polyporales

M Binder, A Justo, R Riley, A Salamov… - Mycologia, 2013 - Taylor & Francis
We present a phylogenetic and phylogenomic overview of the Polyporales. The newly
sequenced genomes of Bjerkandera adusta, Ganoderma sp., and Phlebia brevispora are …

The influence of rate heterogeneity among sites on the time dependence of molecular rates

J Soubrier, M Steel, MSY Lee… - Molecular biology …, 2012 - academic.oup.com
Molecular evolutionary rate estimates have been shown to depend on the time period over
which they are estimated. Factors such as demographic processes, calibration errors …

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times

M Reis, Z Yang - Molecular biology and evolution, 2011 - academic.oup.com
The molecular clock provides a powerful way to estimate species divergence times. If
information on some species divergence times is available from the fossil or geological …

[HTML][HTML] The evolution and diversification of oakleaf butterflies

S Wang, D Teng, X Li, P Yang, W Da, Y Zhang… - Cell, 2022 - cell.com
Oakleaf butterflies in the genus Kallima have a polymorphic wing phenotype, enabling these
insects to masquerade as dead leaves. This iconic example of protective resemblance …

The Eucalyptus terpene synthase gene family

C Külheim, A Padovan, C Hefer, ST Krause, TG Köllner… - BMC genomics, 2015 - Springer
Background Terpenoids are abundant in the foliage of Eucalyptus, providing the
characteristic smell as well as being valuable economically and influencing ecological …

Genome-wide introgression among distantly related Heliconius butterfly species

W Zhang, KK Dasmahapatra, J Mallet, GRP Moreira… - Genome biology, 2016 - Springer
Background Although hybridization is thought to be relatively rare in animals, the raw
genetic material introduced via introgression may play an important role in fueling …