I/o access patterns in hpc applications: A 360-degree survey
The high-performance computing I/O stack has been complex due to multiple software
layers, the inter-dependencies among these layers, and the different performance tuning …
layers, the inter-dependencies among these layers, and the different performance tuning …
Sensitive protein alignments at tree-of-life scale using DIAMOND
B Buchfink, K Reuter, HG Drost - Nature methods, 2021 - nature.com
We are at the beginning of a genomic revolution in which all known species are planned to
be sequenced. Accessing such data for comparative analyses is crucial in this new age of …
be sequenced. Accessing such data for comparative analyses is crucial in this new age of …
Bioinformatics applications on apache spark
With the rapid development of next-generation sequencing technology, ever-increasing
quantities of genomic data pose a tremendous challenge to data processing. Therefore …
quantities of genomic data pose a tremendous challenge to data processing. Therefore …
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits
S Miyauchi, E Kiss, A Kuo, E Drula, A Kohler… - Nature …, 2020 - nature.com
Mycorrhizal fungi are mutualists that play crucial roles in nutrient acquisition in terrestrial
ecosystems. Mycorrhizal symbioses arose repeatedly across multiple lineages of …
ecosystems. Mycorrhizal symbioses arose repeatedly across multiple lineages of …
Megaphylogeny resolves global patterns of mushroom evolution
Mushroom-forming fungi (Agaricomycetes) have the greatest morphological diversity and
complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles …
complexity of any group of fungi. They have radiated into most niches and fulfil diverse roles …
Temperature management in data centers: Why some (might) like it hot
The energy consumed by data centers is starting to make up a significant fraction of the
world's energy consumption and carbon emissions. A large fraction of the consumed energy …
world's energy consumption and carbon emissions. A large fraction of the consumed energy …
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria
Armillaria species are both devastating forest pathogens and some of the largest terrestrial
organisms on Earth. They forage for hosts and achieve immense colony sizes via …
organisms on Earth. They forage for hosts and achieve immense colony sizes via …
Cloudblast: Combining mapreduce and virtualization on distributed resources for bioinformatics applications
A Matsunaga, M Tsugawa… - 2008 IEEE Fourth …, 2008 - ieeexplore.ieee.org
This paper proposes and evaluates an approach to the parallelization, deployment and
management of bioinformatics applications that integrates several emerging technologies …
management of bioinformatics applications that integrates several emerging technologies …
Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
Background Microbial life dominates the earth, but many species are difficult or even
impossible to study under laboratory conditions. Sequencing DNA directly from the …
impossible to study under laboratory conditions. Sequencing DNA directly from the …
Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing
APM Weber, KL Weber, K Carr, C Wilkerson… - Plant …, 2007 - academic.oup.com
Massively parallel sequencing of DNA by pyrosequencing technology offers much higher
throughput and lower cost than conventional Sanger sequencing. Although extensively used …
throughput and lower cost than conventional Sanger sequencing. Although extensively used …