Integrating fossil observations into phylogenetics using the fossilized birth–death model

AM Wright, DW Bapst, J Barido-Sottani… - Annual Review of …, 2022 - annualreviews.org
Over the past decade, a new set of methods for estimating dated trees has emerged.
Originally referred to as the fossilized birth–death (FBD) process, this single model has …

Evolutionary models for the diversification of placental mammals across the KPg boundary

MS Springer, NM Foley, PL Brady, J Gatesy… - Frontiers in …, 2019 - frontiersin.org
Deciphering the timing of the placental mammal radiation is a longstanding problem in
evolutionary biology, but consensus on the tempo and mode of placental diversification …

Successive climate crises in the deep past drove the early evolution and radiation of reptiles

TR Simões, CF Kammerer, MW Caldwell… - Science …, 2022 - science.org
Climate change–induced mass extinctions provide unique opportunities to explore the
impacts of global environmental disturbances on organismal evolution. However, their …

Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates

TR Simões, MW Caldwell, SE Pierce - BMC biology, 2020 - Springer
Background The vast majority of all life that ever existed on earth is now extinct and several
aspects of their evolutionary history can only be assessed by using morphological data from …

Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments

JM Wolfe, L Ballou, J Luque, VM Watson-Zink… - Systematic …, 2024 - academic.oup.com
For much of terrestrial biodiversity, the evolutionary pathways of adaptation from marine
ancestors are poorly understood and have usually been viewed as a binary trait. True crabs …

Reassessing the phylogeny and divergence times of sloths (Mammalia: Pilosa: Folivora), exploring alternative morphological partitioning and dating models

DM Casali, A Boscaini, TJ Gaudin… - Zoological Journal of …, 2022 - academic.oup.com
Phylogenetic relationships among sloths (Folivora) have been extensively studied in the
past few decades using maximum parsimony approaches. Recently, Bayesian phylogenetic …

[HTML][HTML] Sustained high rates of morphological evolution during the rise of tetrapods

TR Simões, SE Pierce - Nature Ecology & Evolution, 2021 - nature.com
The fish-to-tetrapod transition is one of the most iconic events in vertebrate evolution, yet
fundamental questions regarding the dynamics of this transition remain unresolved. Here …

Mind the outgroup and bare branches in total-evidence dating: a case study of pimpliform Darwin wasps (Hymenoptera, Ichneumonidae)

T Spasojevic, GR Broad, IE Sääksjärvi… - Systematic …, 2021 - academic.oup.com
Taxon sampling is a central aspect of phylogenetic study design, but it has received limited
attention in the context of total-evidence dating, a widely used dating approach that directly …

Including fossils in phylogeny: a glimpse into the evolution of the superfamily Evanioidea (Hymenoptera: Apocrita) under tip-dating and the fossilized birth–death …

C Jouault, A Maréchal, FL Condamine… - Zoological Journal of …, 2022 - academic.oup.com
Using a fossilized birth–death model, a new phylogeny of the superfamily Evanioidea
(including ensign wasps, nightshade wasps and hatchet wasps) is proposed, with estimates …

The importance of the Andes in the evolutionary radiation of Sigmodontinae (Rodentia, Cricetidae), the most diverse group of mammals in the Neotropics

P Vallejos-Garrido, K Pino, N Espinoza-Aravena… - Scientific Reports, 2023 - nature.com
The Andean mountains stand out for their striking species richness and endemicity that
characterize many emblematic Neotropical clades distributed in or around these mountains …