Within-host evolution of the gut microbiome
Gut bacteria inhabit a complex environment that is shaped by interactions with their host and
the other members of the community. While these ecological interactions have evolved over …
the other members of the community. While these ecological interactions have evolved over …
Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit
DJ Schwartz, N Shalon, K Wardenburg… - Science translational …, 2023 - science.org
Bacterial bloodstream infections (BSIs) resulting in late-onset sepsis affect up to half of
extremely preterm infants and have substantial morbidity and mortality. Bacterial species …
extremely preterm infants and have substantial morbidity and mortality. Bacterial species …
Sequencing-based analysis of microbiomes
Microbiomes occupy a range of niches and, in addition to having diverse compositions, they
have varied functional roles that have an impact on agriculture, environmental sciences, and …
have varied functional roles that have an impact on agriculture, environmental sciences, and …
A dual-mode ratiometric aptasensor for accurate detection of pathogenic bacteria based on recycling of DNAzyme activation
X Shan, D Kuang, Q Feng, M Wu, J Yang - Food Chemistry, 2023 - Elsevier
Pathogenic bacteria have a significant impact on food safety. Herein, an innovative dual-
mode ratiometric aptasensor was constructed for ultrasensitive and accurate detection of …
mode ratiometric aptasensor was constructed for ultrasensitive and accurate detection of …
Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes
The detection of oral bacteria in faecal samples has been associated with inflammation and
intestinal diseases. The increased relative abundance of oral bacteria in faeces has two …
intestinal diseases. The increased relative abundance of oral bacteria in faeces has two …
DCiPatho: deep cross-fusion networks for genome scale identification of pathogens
Pathogen detection from biological and environmental samples is important for global
disease control. Despite advances in pathogen detection using deep learning, current …
disease control. Despite advances in pathogen detection using deep learning, current …
[HTML][HTML] A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients
Hospitalized patients receiving hematopoietic cell transplants provide a unique opportunity
to study the human gut microbiome. We previously compiled a large-scale longitudinal …
to study the human gut microbiome. We previously compiled a large-scale longitudinal …
Dual DNA recycling amplifications coupled with Au NPs@ ZIF-MOF accelerator for enhanced electrochemical ratiometric sensing of pathogenic bacteria
X Shan, H Xie, T Zhou, M Wu, J Yang - Talanta, 2023 - Elsevier
Sensitive and accurate quantification of pathogenic bacteria is vastly significant to the
related food safety. Herein, a sensitive ratiometric electrochemical biosensor was developed …
related food safety. Herein, a sensitive ratiometric electrochemical biosensor was developed …
[HTML][HTML] Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation
CJ Severyn, BA Siranosian, STJ Kong, A Moreno… - JCI insight, 2022 - ncbi.nlm.nih.gov
BACKGROUND Gut decontamination (GD) can decrease the incidence and severity of acute
graft-versus-host disease (aGVHD) in murine models of allogeneic hematopoietic cell …
graft-versus-host disease (aGVHD) in murine models of allogeneic hematopoietic cell …
A novel paper-based electrochemiluminescence biosensor for non-destructive detection of pathogenic bacteria in real samples
Q Feng, C Wang, X Miao, M Wu - Talanta, 2024 - Elsevier
The demand for sensitive, portable, and non-destructive analysis of pathogenic bacteria is of
significance in point-of-care diagnosis. Herein, we constructed a smart …
significance in point-of-care diagnosis. Herein, we constructed a smart …