Within-host evolution of the gut microbiome

T Dapa, DPGH Wong, KS Vasquez, KB Xavier… - Current Opinion in …, 2023 - Elsevier
Gut bacteria inhabit a complex environment that is shaped by interactions with their host and
the other members of the community. While these ecological interactions have evolved over …

Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit

DJ Schwartz, N Shalon, K Wardenburg… - Science translational …, 2023 - science.org
Bacterial bloodstream infections (BSIs) resulting in late-onset sepsis affect up to half of
extremely preterm infants and have substantial morbidity and mortality. Bacterial species …

Sequencing-based analysis of microbiomes

Y Pinto, AS Bhatt - Nature Reviews Genetics, 2024 - nature.com
Microbiomes occupy a range of niches and, in addition to having diverse compositions, they
have varied functional roles that have an impact on agriculture, environmental sciences, and …

A dual-mode ratiometric aptasensor for accurate detection of pathogenic bacteria based on recycling of DNAzyme activation

X Shan, D Kuang, Q Feng, M Wu, J Yang - Food Chemistry, 2023 - Elsevier
Pathogenic bacteria have a significant impact on food safety. Herein, an innovative dual-
mode ratiometric aptasensor was constructed for ultrasensitive and accurate detection of …

Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes

C Liao, T Rolling, A Djukovic, T Fei, V Mishra… - Nature …, 2024 - nature.com
The detection of oral bacteria in faecal samples has been associated with inflammation and
intestinal diseases. The increased relative abundance of oral bacteria in faeces has two …

DCiPatho: deep cross-fusion networks for genome scale identification of pathogens

G Jiang, J Zhang, Y Zhang, X Yang, T Li… - Briefings in …, 2023 - academic.oup.com
Pathogen detection from biological and environmental samples is important for global
disease control. Despite advances in pathogen detection using deep learning, current …

[HTML][HTML] A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients

J Yan, C Liao, BP Taylor, E Fontana, LA Amoretti… - Scientific data, 2022 - nature.com
Hospitalized patients receiving hematopoietic cell transplants provide a unique opportunity
to study the human gut microbiome. We previously compiled a large-scale longitudinal …

Dual DNA recycling amplifications coupled with Au NPs@ ZIF-MOF accelerator for enhanced electrochemical ratiometric sensing of pathogenic bacteria

X Shan, H Xie, T Zhou, M Wu, J Yang - Talanta, 2023 - Elsevier
Sensitive and accurate quantification of pathogenic bacteria is vastly significant to the
related food safety. Herein, a sensitive ratiometric electrochemical biosensor was developed …

[HTML][HTML] Microbiota dynamics in a randomized trial of gut decontamination during allogeneic hematopoietic cell transplantation

CJ Severyn, BA Siranosian, STJ Kong, A Moreno… - JCI insight, 2022 - ncbi.nlm.nih.gov
BACKGROUND Gut decontamination (GD) can decrease the incidence and severity of acute
graft-versus-host disease (aGVHD) in murine models of allogeneic hematopoietic cell …

A novel paper-based electrochemiluminescence biosensor for non-destructive detection of pathogenic bacteria in real samples

Q Feng, C Wang, X Miao, M Wu - Talanta, 2024 - Elsevier
The demand for sensitive, portable, and non-destructive analysis of pathogenic bacteria is of
significance in point-of-care diagnosis. Herein, we constructed a smart …