Incorporating topological information for predicting robust cancer subnetwork markers in human protein-protein interaction network

N Khunlertgit, BJ Yoon - BMC bioinformatics, 2016 - Springer
Background Discovering robust markers for cancer prognosis based on gene expression
data is an important yet challenging problem in translational bioinformatics. By integrating …

Computational identification of genetic subnetwork modules associated with maize defense response to Fusarium verticillioides

M Kim, H Zhang, C Woloshuk, WB Shim, BJ Yoon - BMC bioinformatics, 2015 - Springer
Background Maize, a crop of global significance, is vulnerable to a variety of biotic stresses
resulting in economic losses. Fusarium verticillioides (teleomorph Gibberella moniliformis) is …

Computational prediction of pathogenic network modules in Fusarium verticillioides

M Kim, H Zhang, C Woloshuk… - … /ACM Transactions on …, 2015 - ieeexplore.ieee.org
Fusarium verticillioides is a fungal pathogen that triggers stalk rots and ear rots in maize. In
this study, we performed a comparative analysis of wild type and loss-of-virulence mutant F …

[PDF][PDF] Survey on Identification Tools for Hepatocellular Carcinoma-A Review

G Rajesh, A Priyadharson - infection, 2007 - academia.edu
Aims: The main objective of this paper is to review the technologies used for the detection of
Hepatocellular Carcinoma. Study Design: Convective cooling protects the cancer cells from …

Computational Identification of Functional Modules and Hub Genes Involved in Pathogenicity-Associated or Defense Response on Fusarium Verticillioides-Maize …

M Kim - 2016 - oaktrust.library.tamu.edu
Fusarium verticillioides is one of the key pathogens for stalk rot and ear rot on maize. While
several genes associated with F. verticillioides pathogenicity and mycotoxin biosynthesis …

Characterization of Fsr1-Interacting Complex and Its Downstream Pathogenic Subnetwork Modules in Fusarium verticillioides

H Zhang - 2017 - oaktrust.library.tamu.edu
Fusarium verticillioides is an ascomycete fungus responsible for stalk and ear rots of maize.
Previously, we identified a striatin-like protein Fsr1 that plays a key role in stalk rot …

Improvement of Reproducibility in Cancer Classification Based on Pathway Markers and Subnetwork Markers

N Khunlertgit - 2016 - oaktrust.library.tamu.edu
Identification of robust biomarkers for cancer prognosis based on gene expression data is
an important research problem in translational genomics. The high-dimensional and small …