Current and emerging sequencing-based tools for precision cancer medicine

A Edsjö, D Gisselsson, J Staaf, L Holmquist… - Molecular Aspects of …, 2024 - Elsevier
Current precision cancer medicine is dependent on the analyses of a plethora of clinically
relevant genomic aberrations. During the last decade, next-generation sequencing (NGS) …

Review of Molecular Technologies for Investigating Canine Cancer

A Kehl, H Aupperle-Lellbach, S de Brot… - Animals, 2024 - mdpi.com
Simple Summary Genetic molecular testing is starting to become part of standard clinical
practice for dogs with cancer as it can assist veterinarians with diagnosis, provide …

Molecular analysis of primary and metastatic sites in patients with renal cell carcinoma

S Gulati, PC Barata, A Elliott, MA Bilen… - The Journal of clinical …, 2024 - jci.org
BACKGROUND Metastases are the hallmark of lethal cancer, though underlying
mechanisms that drive metastatic spread to specific organs remain poorly understood …

Assessing DNA Degradation through Differential Amplification Efficiency of Total Human and Human Male DNA in a Forensic qPCR Assay

E Chierto, S Aneli, N Nocco, A Riem, M Onofri… - Genes, 2024 - mdpi.com
The assessment of degradation is crucial for the analysis of human DNA samples isolated
from forensic specimens. Forensic quantitative PCR (qPCR) assays can include multiple …

Systematic review and feasibility study on pre-analytical factors and genomic analyses on archival formalin-fixed paraffin-embedded breast cancer tissue

D Salgkamis, EG Sifakis, S Agartz, V Wirta… - Scientific Reports, 2024 - nature.com
Formalin-fixed paraffin-embedded (FFPE) tissue represents a valuable source for
translational cancer research. However, the widespread application of various downstream …

Single Nucleus Total RNA Sequencing of Formalin‐Fixed Paraffin‐Embedded Gliomas

Z Xu, L Chen, X Lin, Y Lyu, M Zhou, H Chen… - Small …, 2024 - Wiley Online Library
Gliomas, the predominant form of brain cancer, comprise diverse malignant subtypes with
limited curative therapies available. The insufficient understanding of their molecular …

Assessment of gene–disease associations and recommendations for genetic testing for somatic variants in vascular anomalies by VASCERN-VASCA

N Revencu, A Eijkelenboom, C Bracquemart… - Orphanet journal of rare …, 2024 - Springer
Background Vascular anomalies caused by somatic (postzygotic) variants are clinically and
genetically heterogeneous diseases with overlapping or distinct entities. The genetic …

[HTML][HTML] Phenotyping Tumor Heterogeneity through Proteogenomics: Study Models and Challenges

D Piana, F Iavarone, E De Paolis, G Daniele… - International Journal of …, 2024 - mdpi.com
Tumor heterogeneity refers to the diversity observed among tumor cells: both between
different tumors (inter-tumor heterogeneity) and within a single tumor (intra-tumor …

Emerging Approaches to Profile Accessible Chromatin from Formalin-Fixed Paraffin-Embedded Sections

VUN Sunitha Kumary, BJ Venters, K Raman, S Sen… - Epigenomes, 2024 - mdpi.com
Nucleosomes are non-uniformly distributed across eukaryotic genomes, with stretches of
'open'chromatin strongly associated with transcriptionally active promoters and enhancers …

Paired comparison of the analytical performance between the Oncomine™ Comprehensive Assay v3 and whole-exome sequencing of ovarian cancer tissue

J Lopacinska-Jørgensen, LK Vestergaard… - Molecular Biology …, 2024 - Springer
Background Next-generation sequencing (NGS) has been implemented in clinical oncology
as a personalized medicine tool to identify targetable genetic alterations and to guide …