[HTML][HTML] Invited review: Beef-on-dairy—The generation of crossbred beef× dairy cattle

DP Berry - Journal of Dairy Science, 2021 - Elsevier
Because a growing proportion of the beef output in many countries originates from dairy
herds, the most critical decisions about the genetic merit of most carcasses harvested are …

Using imputation-based whole-genome sequencing data to improve the accuracy of genomic prediction for combined populations in pigs

H Song, S Ye, Y Jiang, Z Zhang, Q Zhang… - Genetics Selection …, 2019 - Springer
Background For genomic selection in populations with a small reference population,
combining populations of the same breed or populations of related breeds is an effective …

Genomic prediction with whole-genome sequence data in intensely selected pig lines

R Ros-Freixedes, M Johnsson, A Whalen… - Genetics Selection …, 2022 - Springer
Background Early simulations indicated that whole-genome sequence data (WGS) could
improve the accuracy of genomic predictions within and across breeds. However, empirical …

Genomic prediction based on selected variants from imputed whole-genome sequence data in Australian sheep populations

N Moghaddar, M Khansefid, JHJ van Der Werf… - Genetics Selection …, 2019 - Springer
Background Whole-genome sequence (WGS) data could contain information on genetic
variants at or in high linkage disequilibrium with causative mutations that underlie the …

Significance testing and genomic inflation factor using high‐density genotypes or whole‐genome sequence data

S van den Berg, J Vandenplas… - Journal of Animal …, 2019 - Wiley Online Library
Significance testing for genome‐wide association study (GWAS) with increasing SNP
density up to whole‐genome sequence data (WGS) is not straightforward, because of strong …

Genomic prediction based on SNP functional annotation using imputed whole-genome sequence data in Korean Hanwoo cattle

BIM Lopez, N An, K Srikanth, S Lee, JD Oh… - Frontiers in …, 2021 - frontiersin.org
Whole-genome sequence (WGS) data are increasingly being applied into genomic
predictions, offering a higher predictive ability by including causal mutations or single …

Genomic prediction based on selective linkage disequilibrium pruning of low-coverage whole-genome sequence variants in a pure Duroc population

D Zhu, Y Zhao, R Zhang, H Wu, G Cai, Z Wu… - Genetics Selection …, 2023 - Springer
Background Although the accumulation of whole-genome sequencing (WGS) data has
accelerated the identification of mutations underlying complex traits, its impact on the …

QTLs associated with resistance to cardiomyopathy syndrome in Atlantic salmon

S Boison, J Ding, E Leder, B Gjerde… - Journal of …, 2019 - academic.oup.com
Cardiomyopathy syndrome (CMS) caused by piscine myocarditis virus is a major disease
affecting the Norwegian Atlantic salmon industry. Three different populations of Atlantic …

Use of whole-genome sequence data and novel genomic selection strategies to improve selection for age at puberty in tropically-adapted beef heifers

CL Warburton, BN Engle, EM Ross, R Costilla… - Genetics Selection …, 2020 - Springer
Background In tropically-adapted beef heifers, application of genomic prediction for age at
puberty has been limited due to low prediction accuracies. Our aim was to investigate novel …

The impact of non-additive effects on the genetic correlation between populations

P Duenk, P Bijma, MPL Calus… - G3: Genes …, 2020 - academic.oup.com
Average effects of alleles can show considerable differences between populations. The
magnitude of these differences can be measured by the additive genetic correlation …