Current opportunities and challenges in microbial metagenome analysis—a bioinformatic perspective
H Teeling, FO Glöckner - Briefings in bioinformatics, 2012 - academic.oup.com
Metagenomics has become an indispensable tool for studying the diversity and metabolic
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
potential of environmental microbes, whose bulk is as yet non-cultivable. Continual progress …
Function, distribution, and annotation of characterized cellulases, xylanases, and chitinases from CAZy
STC Nguyen, HL Freund, J Kasanjian… - Applied microbiology and …, 2018 - Springer
The enzymatic deconstruction of structural polysaccharides, which relies on the production
of specific glycoside hydrolases (GHs), is an essential process across environments. Over …
of specific glycoside hydrolases (GHs), is an essential process across environments. Over …
Characterizing the mucin-degrading capacity of the human gut microbiota
Mucin-degrading microbes are known to harbor glycosyl hydrolases (GHs) which cleave
specific glycan linkages. Although several microbial species have been identified as mucin …
specific glycan linkages. Although several microbial species have been identified as mucin …
Rhizosphere microbiome structure alters to enable wilt resistance in tomato
Tomato variety Hawaii 7996 is resistant to the soil-borne pathogen Ralstonia solanacearum,
whereas the Moneymaker variety is susceptible to the pathogen. To evaluate whether plant …
whereas the Moneymaker variety is susceptible to the pathogen. To evaluate whether plant …
dbCAN2: a meta server for automated carbohydrate-active enzyme annotation
Complex carbohydrates of plants are the main food sources of animals and microbes, and
serve as promising renewable feedstock for biofuel and biomaterial production …
serve as promising renewable feedstock for biofuel and biomaterial production …
dbCAN: a web resource for automated carbohydrate-active enzyme annotation
Carbohydrate-active enzymes (CAZymes) are very important to the biotech industry,
particularly the emerging biofuel industry because CAZymes are responsible for the …
particularly the emerging biofuel industry because CAZymes are responsible for the …
dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation
Carbohydrate-active enzyme (CAZymes) are not only the most important enzymes for
bioenergy and agricultural industries, but also very important for human health, in that …
bioenergy and agricultural industries, but also very important for human health, in that …
Exopolysaccharide biosynthetic glycoside hydrolases can be utilized to disrupt and prevent Pseudomonas aeruginosa biofilms
Bacterial biofilms present a significant medical challenge because they are recalcitrant to
current therapeutic regimes. A key component of biofilm formation in the opportunistic …
current therapeutic regimes. A key component of biofilm formation in the opportunistic …
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species
Background Aureobasidium pullulans is a black-yeast-like fungus used for production of the
polysaccharide pullulan and the antimycotic aureobasidin A, and as a biocontrol agent in …
polysaccharide pullulan and the antimycotic aureobasidin A, and as a biocontrol agent in …
Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean
Planktonic bacteria dominate surface ocean biomass and influence global biogeochemical
processes, but remain poorly characterized owing to difficulties in cultivation. Using large …
processes, but remain poorly characterized owing to difficulties in cultivation. Using large …