Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Quantitative proteomics using isobaric labeling: a practical guide

X Chen, Y Sun, T Zhang, L Shu… - Genomics …, 2021 - academic.oup.com
In the past decade, relative proteomic quantification using isobaric labeling technology has
developed into a key tool for comparing the expression of proteins in biological samples …

Multi-omics analyses of the ulcerative colitis gut microbiome link Bacteroides vulgatus proteases with disease severity

RH Mills, PS Dulai, Y Vázquez-Baeza, C Sauceda… - Nature …, 2022 - nature.com
Ulcerative colitis (UC) is driven by disruptions in host–microbiota homoeostasis, but current
treatments exclusively target host inflammatory pathways. To understand how host …

Reproducible workflow for multiplexed deep-scale proteome and phosphoproteome analysis of tumor tissues by liquid chromatography–mass spectrometry

P Mertins, LC Tang, K Krug, DJ Clark, MA Gritsenko… - Nature protocols, 2018 - nature.com
Here we present an optimized workflow for global proteome and phosphoproteome analysis
of tissues or cell lines that uses isobaric tags (TMT (tandem mass tags)-10) for multiplexed …

Glucocorticoids promote breast cancer metastasis

MMS Obradović, B Hamelin, N Manevski, JP Couto… - Nature, 2019 - nature.com
Diversity within or between tumours and metastases (known as intra-patient tumour
heterogeneity) that develops during disease progression is a serious hurdle for therapy …

[HTML][HTML] Restoration of energy homeostasis by SIRT6 extends healthy lifespan

A Roichman, S Elhanati, MA Aon, I Abramovich… - Nature …, 2021 - nature.com
Aging leads to a gradual decline in physical activity and disrupted energy homeostasis. The
NAD+-dependent SIRT6 deacylase regulates aging and metabolism through mechanisms …

[HTML][HTML] Organoid models of human and mouse ductal pancreatic cancer

SF Boj, CI Hwang, LA Baker, IIC Chio, DD Engle… - Cell, 2015 - cell.com
Pancreatic cancer is one of the most lethal malignancies due to its late diagnosis and limited
response to treatment. Tractable methods to identify and interrogate pathways involved in …

A draft map of the human proteome

MS Kim, SM Pinto, D Getnet, RS Nirujogi, SS Manda… - Nature, 2014 - nature.com
The availability of human genome sequence has transformed biomedical research over the
past decade. However, an equivalent map for the human proteome with direct …

High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform

SJ Humphrey, O Karayel, DE James, M Mann - Nature protocols, 2018 - nature.com
Mass spectrometry has transformed the field of cell signaling by enabling global studies of
dynamic protein phosphorylation ('phosphoproteomics'). Recent developments are enabling …

Rescue of oxytocin response and social behaviour in a mouse model of autism

H Hörnberg, E Pérez-Garci, D Schreiner… - Nature, 2020 - nature.com
A fundamental challenge in developing treatments for autism spectrum disorders is the
heterogeneity of the condition. More than one hundred genetic mutations confer high risk for …