Cancer driver mutations: predictions and reality
D Ostroverkhova, TM Przytycka… - Trends in Molecular …, 2023 - cell.com
Cancer cells accumulate many genetic alterations throughout their lifetime, but only a few of
them drive cancer progression, termed driver mutations. Driver mutations may vary between …
them drive cancer progression, termed driver mutations. Driver mutations may vary between …
A critical review of five machine learning-based algorithms for predicting protein stability changes upon mutation
J Fang - Briefings in bioinformatics, 2020 - academic.oup.com
A number of machine learning (ML)-based algorithms have been proposed for predicting
mutation-induced stability changes in proteins. In this critical review, we used hypothetical …
mutation-induced stability changes in proteins. In this critical review, we used hypothetical …
MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions
N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez… - Iscience, 2020 - cell.com
Missense mutations may affect proteostasis by destabilizing or over-stabilizing protein
complexes and changing the pathway flux. Predicting the effects of stabilizing mutations on …
complexes and changing the pathway flux. Predicting the effects of stabilizing mutations on …
Precision medicine and driver mutations: computational methods, functional assays and conformational principles for interpreting cancer drivers
R Nussinov, H Jang, CJ Tsai… - PLoS computational …, 2019 - journals.plos.org
At the root of the so-called precision medicine or precision oncology, which is our focus
here, is the hypothesis that cancer treatment would be considerably better if therapies were …
here, is the hypothesis that cancer treatment would be considerably better if therapies were …
Allosteric drugs and mutations: chances, challenges, and necessity
E Guarnera, IN Berezovsky - Current opinion in structural biology, 2020 - Elsevier
Highlights•Allosteric drugs have become an indispensable tool in precision medicine.•Major
targets for allosteric drugs: diversity structures and functions.•Allosteric effects of mutations …
targets for allosteric drugs: diversity structures and functions.•Allosteric effects of mutations …
MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions
Proteins engage in highly selective interactions with their macromolecular partners.
Sequence variants that alter protein binding affinity may cause significant perturbations or …
Sequence variants that alter protein binding affinity may cause significant perturbations or …
Finding driver mutations in cancer: Elucidating the role of background mutational processes
Identifying driver mutations in cancer is notoriously difficult. To date, recurrence of a mutation
in patients remains one of the most reliable markers of mutation driver status. However …
in patients remains one of the most reliable markers of mutation driver status. However …
Molecular biology and evolution of cancer: from discovery to action
Cancer progression is an evolutionary process. During this process, evolving cancer cell
populations encounter restrictive ecological niches within the body, such as the primary …
populations encounter restrictive ecological niches within the body, such as the primary …
On the perturbation nature of allostery: sites, mutations, and signal modulation
E Guarnera, IN Berezovsky - Current opinion in structural biology, 2019 - Elsevier
Regardless of the diversity of systems, allosteic signalling is found to be always caused by
perturbations. This recurring trait of allostery serves as a foundation for developing different …
perturbations. This recurring trait of allostery serves as a foundation for developing different …
AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations
The AlloSigMA 2 server provides an interactive platform for exploring the allosteric signaling
caused by ligand binding and/or mutations, for analyzing the allosteric effects of mutations …
caused by ligand binding and/or mutations, for analyzing the allosteric effects of mutations …