Multiplexed imaging of high-density libraries of RNAs with MERFISH and expansion microscopy

G Wang, JR Moffitt, X Zhuang - Scientific reports, 2018 - nature.com
As an image-based single-cell transcriptomics approach, multiplexed error-robust
fluorescence in situ hybridization (MERFISH) allows hundreds to thousands of RNA species …

Automating multimodal microscopy with NanoJ-Fluidics

P Almada, PM Pereira, S Culley, G Caillol… - Nature …, 2019 - nature.com
Combining and multiplexing microscopy approaches is crucial to understand cellular events,
but requires elaborate workflows. Here, we present a robust, open-source approach for …

DoGNet: A deep architecture for synapse detection in multiplexed fluorescence images

V Kulikov, SM Guo, M Stone, A Goodman… - PLoS computational …, 2019 - journals.plos.org
Neuronal synapses transmit electrochemical signals between cells through the coordinated
action of presynaptic vesicles, ion channels, scaffolding and adapter proteins, and …

Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER

SK Saka, Y Wang, JY Kishi, A Zhu, Y Zeng, W Xie… - Biorxiv, 2018 - biorxiv.org
Probing the molecular organization of tissues requires in situ analysis by microscopy.
However current limitations in multiplexing, sensitivity, and throughput collectively constitute …

Subcellular localization of drug distribution by super-resolution ion beam imaging

X Rovira-Clave, S Jiang, Y Bai, G Barlow, S Bhate… - bioRxiv, 2019 - biorxiv.org
Technologies that visualize multiple biomolecules at the nanometer scale in cells will enable
deeper understanding of biological processes that proceed at the molecular scale. Current …

[HTML][HTML] Reporting on the future of integrative structural biology ORAU workshop

GL Hamilton, J Alper, H Sanabria - Frontiers in bioscience …, 2020 - ncbi.nlm.nih.gov
Integrative and hybrid methods have the potential to bridge long-standing knowledge gaps
in structural biology. These methods will have a prominent role in the future of the field as we …

Segmentation of Synapses in Fluorescent Images using U-Net++ and Gabor-based Anisotropic Diffusion

Y Yan, Z Qiu, Q Zhang - 2021 IEEE International Conference on …, 2021 - ieeexplore.ieee.org
Objective: Large-scale and automated detection of fluorescent microscopic synaptic images
are essential for the understanding of brain function and disorders at the molecular level …

Multiplexed imaging of neuronal synapses using nucleic acid probe exchange

M Bathe, SM Guo, L Li, R Veneziano, S Gordonov… - 2018 - researchsquare.com
Neuronal synapses contain hundreds of protein species whose expression levels and sub-
micron-scale localizations are core determinants of neuronal plasticity and signal …

Nucleic acid assemblies for use in targeted delivery

F Zhang, T Shepherd, R Veneziano, M Bathe… - 2020 - Google Patents
the disclosed invention is generally in the field of nucleic acid assemblies and specifically in
the area of nucleic acid assemblies for targeting cargo to cells, tissues, organs, and …

Labeling of molecular probes with nonmetal and metalloid isotopes for multiplexed high resolution analysis

SY Chen, XR CLAVE, GP Nolan, S JIANG - 2019 - Google Patents
datasets are generated with antibody or oligonucleotide probes panels in which each
antibody or oligonucleotide is conjugated to a polymer that chelates stable metal isotopes …