Transcription-driven genome organization: a model for chromosome structure and the regulation of gene expression tested through simulations
PR Cook, D Marenduzzo - Nucleic acids research, 2018 - academic.oup.com
Current models for the folding of the human genome see a hierarchy stretching down from
chromosome territories, through A/B compartments and topologically-associating domains …
chromosome territories, through A/B compartments and topologically-associating domains …
Real-time imaging of DNA loop extrusion by condensin
It has been hypothesized that SMC protein complexes such as condensin and cohesin
spatially organize chromosomes by extruding DNA into large loops. We directly visualized …
spatially organize chromosomes by extruding DNA into large loops. We directly visualized …
Emerging evidence of chromosome folding by loop extrusion
Chromosome organization poses a remarkable physical problem with many biological
consequences: How can molecular interactions between proteins at the nanometer scale …
consequences: How can molecular interactions between proteins at the nanometer scale …
SMC5/6: multifunctional player in replication
JJ Palecek - Genes, 2018 - mdpi.com
The genome replication process is challenged at many levels. Replication must proceed
through different problematic sites and obstacles, some of which can pause or even reverse …
through different problematic sites and obstacles, some of which can pause or even reverse …
The condensin holocomplex cycles dynamically between open and collapsed states
JK Ryu, AJ Katan, EO van der Sluis, T Wisse… - Nature structural & …, 2020 - nature.com
Structural maintenance of chromosome (SMC) protein complexes are the key organizers of
the spatiotemporal structure of chromosomes. The condensin SMC complex has recently …
the spatiotemporal structure of chromosomes. The condensin SMC complex has recently …
Force spectroscopy on single molecules of life
SS Mandal - ACS omega, 2020 - ACS Publications
Biomolecules such as nucleic acids and proteins constitute the cells and its organelles that
form the crucial components in all living organisms. They are associated with a variety of …
form the crucial components in all living organisms. They are associated with a variety of …
Genetic conflicts in budding yeast: The 2μ plasmid as a model selfish element
M Hays - Seminars in Cell & Developmental Biology, 2024 - Elsevier
Antagonistic coevolution, arising from genetic conflict, can drive rapid evolution and
biological innovation. Conflict can arise both between organisms and within genomes. This …
biological innovation. Conflict can arise both between organisms and within genomes. This …
[PDF][PDF] Structure-function relationships of SMC protein complexes for DNA loop extrusion
H Lee, H Noh, JK Ryu - BioDesign, 2021 - scholar.archive.org
SMC complexes are believed to be key universal mechanochemical motor proteins that
extrude DNA loops processively using ATP hydrolysis, contributing to macroscale …
extrude DNA loops processively using ATP hydrolysis, contributing to macroscale …
Escherichia coli CrfC Protein, a Nucleoid Partition Factor, Localizes to Nucleoid Poles via the Activities of Specific Nucleoid-Associated Proteins
S Taniguchi, K Kasho, S Ozaki… - Frontiers in microbiology, 2019 - frontiersin.org
The Escherichia coli CrfC protein is an important regulator of nucleoid positioning and
equipartition. Previously we revealed that CrfC homo-oligomers bind the clamp, a DNA …
equipartition. Previously we revealed that CrfC homo-oligomers bind the clamp, a DNA …
AFM images of open and collapsed states of yeast condensin suggest a scrunching model for DNA loop extrusion
JK Ryu, AJ Katan, EO van der Sluis, T Wisse… - BioRxiv, 2019 - biorxiv.org
SUMMARY Structural Maintenance of Chromosome (SMC) protein complexes are the key
organizers of the spatiotemporal structure of chromosomes. The condensin SMC complex …
organizers of the spatiotemporal structure of chromosomes. The condensin SMC complex …