[HTML][HTML] Genotyping-by-sequencing in ecological and conservation genomics

SR Narum, CA Buerkle, JW Davey, MR Miller… - Molecular …, 2013 - ncbi.nlm.nih.gov
The fields of ecological and conservation genetics have developed greatly in recent
decades through the use of molecular markers to investigate organisms in their natural …

Avian genomics: fledging into the wild!

RHS Kraus, M Wink - Journal of Ornithology, 2015 - Springer
Next generation sequencing (NGS) technologies provide great resources to study bird
evolution and avian functional genomics. They also allow for the identification of suitable …

Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADS eq)

CF Graham, TC Glenn, AG McArthur… - Molecular ecology …, 2015 - Wiley Online Library
Degraded DNA from suboptimal field sampling is common in molecular ecology. However,
its impact on techniques that use restriction site associated next‐generation DNA …

Spatially explicit analysis of genome-wide SNPs detects subtle population structure in a mobile marine mammal, the harbor porpoise

L Lah, D Trense, H Benke, P Berggren… - PloS one, 2016 - journals.plos.org
The population structure of the highly mobile marine mammal, the harbor porpoise
(Phocoena phocoena), in the Atlantic shelf waters follows a pattern of significant isolation-by …

A comparative assessment of SNP and microsatellite markers for assigning parentage in a socially monogamous bird

SA Kaiser, SA Taylor, N Chen, TS Sillett… - Molecular Ecology …, 2017 - Wiley Online Library
Single‐nucleotide polymorphisms (SNP s) are preferred over microsatellite markers in many
evolutionary studies, but have only recently been applied to studies of parentage …

Genotyping‐in‐Thousands by sequencing (GT‐seq) panel development and application to minimally invasive DNA samples to support studies in molecular ecology

DA Schmidt, NR Campbell… - Molecular Ecology …, 2020 - Wiley Online Library
Minimally invasive sampling (MIS) is widespread in wildlife studies; however, its utility for
massively parallel DNA sequencing (MPS) is limited. Poor sample quality and contamination …

The genetic legacy of multiple beaver reintroductions in Central Europe

C Frosch, RHS Kraus, C Angst, R Allgöwer, J Michaux… - PloS one, 2014 - journals.plos.org
The comeback of the Eurasian beaver (Castor fiber) throughout western and central Europe
is considered a major conservation success. Traditionally, several subspecies are …

Genomic signature of successful colonization of Eurasia by the allopolyploid shepherd's purse (Capsella bursa‐pastoris)

A Cornille, A Salcedo, D Kryvokhyzha… - Molecular …, 2016 - Wiley Online Library
Polyploidization is a dominant feature of flowering plant evolution. However, detailed
genomic analyses of the interpopulation diversification of polyploids following genome …

Morphological and genomic comparisons of Hawaiian and Japanese Black‐footed Albatrosses (Phoebastria nigripes) using double digest RADseq: implications for …

EG Dierickx, AJ Shultz, F Sato, T Hiraoka… - Evolutionary …, 2015 - Wiley Online Library
Evaluating the genetic and demographic independence of populations of threatened
species is important for determining appropriate conservation measures, but different …

Genetic structure and viability selection in the golden eagle (Aquila chrysaetos), a vagile raptor with a Holarctic distribution

JM Doyle, TE Katzner, GW Roemer, JW Cain… - Conservation …, 2016 - Springer
Molecular markers can reveal interesting aspects of organismal ecology and evolution,
especially when surveyed in rare or elusive species. Herein, we provide a preliminary …