Gene ontology consortium: going forward
Gene Ontology Consortium - Nucleic acids research, 2015 - academic.oup.com
Abstract The Gene Ontology (GO; http://www. geneontology. org) is a community-based
bioinformatics resource that supplies information about gene product function using …
bioinformatics resource that supplies information about gene product function using …
TFClass: expanding the classification of human transcription factors to their mammalian orthologs
E Wingender, T Schoeps, M Haubrock… - Nucleic acids …, 2018 - academic.oup.com
TFClass is a resource that classifies eukaryotic transcription factors (TFs) according to their
DNA-binding domains (DBDs), available online at http://tfclass. bioinf. med. uni-goettingen …
DNA-binding domains (DBDs), available online at http://tfclass. bioinf. med. uni-goettingen …
TFClass: an expandable hierarchical classification of human transcription factors
E Wingender, T Schoeps, J Dönitz - Nucleic acids research, 2013 - academic.oup.com
Abstract TFClass (http://tfclass. bioinf. med. uni-goettingen. de/) provides a comprehensive
classification of human transcription factors based on their DNA-binding domains …
classification of human transcription factors based on their DNA-binding domains …
iBeetle-Base: a database for RNAi phenotypes in the red flour beetle Tribolium castaneum
J Dönitz, C Schmitt-Engel, D Grossmann… - Nucleic acids …, 2015 - academic.oup.com
Abstract The iBeetle-Base (http://ibeetle-base. uni-goettingen. de) makes available
annotations of RNAi phenotypes, which were gathered in a large scale RNAi screen in the …
annotations of RNAi phenotypes, which were gathered in a large scale RNAi screen in the …
TFClass: a classification of human transcription factors and their rodent orthologs
E Wingender, T Schoeps, M Haubrock… - Nucleic acids …, 2015 - academic.oup.com
TFClass aims at classifying eukaryotic transcription factors (TFs) according to their DNA-
binding domains (DBDs). For this, a classification schema comprising four generic levels …
binding domains (DBDs). For this, a classification schema comprising four generic levels …
A solution to the challenges of interdisciplinary aggregation and use of specimen-level trait data
Understanding variation of traits within and among species through time and across space is
central to many questions in biology. Many resources assemble species-level trait data, but …
central to many questions in biology. Many resources assemble species-level trait data, but …
Expanded and updated data and a query pipeline for iBeetle-Base
J Dönitz, L Gerischer, S Hahnke, S Pfeiffer… - Nucleic Acids …, 2018 - academic.oup.com
The iBeetle-Base provides access to sequence and phenotype information for genes of the
beetle Tribolium castaneum. It has been updated including more and updated data and new …
beetle Tribolium castaneum. It has been updated including more and updated data and new …
Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies
Background Ontologies are widely used throughout the biomedical domain. These
ontologies formally represent the classes and relations assumed to exist within a domain. As …
ontologies formally represent the classes and relations assumed to exist within a domain. As …
New associations between drug-induced adverse events in animal models and humans reveal novel candidate safety targets
To improve our ability to extrapolate preclinical toxicity to humans, there is a need to
understand and quantify the concordance of adverse events (AEs) between animal models …
understand and quantify the concordance of adverse events (AEs) between animal models …
TrOn: An Anatomical Ontology for the Beetle Tribolium castaneum
J Dönitz, D Grossmann, I Schild, C Schmitt-Engel… - PloS one, 2013 - journals.plos.org
In a morphological ontology the expert's knowledge is represented in terms, which describe
morphological structures and how these structures relate to each other. With the assistance …
morphological structures and how these structures relate to each other. With the assistance …