Barcodes: the persistent topology of data

R Ghrist - Bulletin of the American Mathematical Society, 2008 - ams.org
This article surveys recent work of Carlsson and collaborators on applications of
computational algebraic topology to problems of feature detection and shape recognition in …

A review of mathematical representations of biomolecular data

DD Nguyen, Z Cang, GW Wei - Physical Chemistry Chemical Physics, 2020 - pubs.rsc.org
Recently, machine learning (ML) has established itself in various worldwide benchmarking
competitions in computational biology, including Critical Assessment of Structure Prediction …

Persistent-homology-based machine learning: a survey and a comparative study

CS Pun, SX Lee, K Xia - Artificial Intelligence Review, 2022 - Springer
A suitable feature representation that can both preserve the data intrinsic information and
reduce data complexity and dimensionality is key to the performance of machine learning …

Topology and data

G Carlsson - Bulletin of the American Mathematical Society, 2009 - ams.org
AMS :: Bulletin of the American Mathematical Society Skip to Main Content American
Mathematical Society American Mathematical Society MathSciNet Bookstore Publications …

Persistent homology-a survey

H Edelsbrunner, J Harer - Contemporary mathematics, 2008 - books.google.com
Persistent homology is an algebraic tool for measuring topological features of shapes and
functions. It casts the multi-scale organization we frequently observe in nature into a …

A topology-based network tree for the prediction of protein–protein binding affinity changes following mutation

M Wang, Z Cang, GW Wei - Nature Machine Intelligence, 2020 - nature.com
The ability to predict protein–protein interactions is crucial to our understanding of a wide
range of biological activities and functions in the human body, and for guiding drug …

Persistent homology analysis of protein structure, flexibility, and folding

K Xia, GW Wei - International journal for numerical methods in …, 2014 - Wiley Online Library
Proteins are the most important biomolecules for living organisms. The understanding of
protein structure, function, dynamics, and transport is one of the most challenging tasks in …

[图书][B] Algorithms and theory of computation handbook, volume 2: special topics and techniques

MJ Atallah, M Blanton - 2009 - books.google.com
This handbook provides an up-to-date compendium of fundamental computer science
topics, techniques, and applications. Along with updating and revising many of the existing …

[图书][B] Sheaves, cosheaves and applications

JM Curry - 2014 - search.proquest.com
This thesis develops the theory of sheaves and cosheaves with an eye towards applications
in science and engineering. To provide a theory that is computable, we focus on a …

Describing shapes by geometrical-topological properties of real functions

S Biasotti, L De Floriani, B Falcidieno… - ACM Computing …, 2008 - dl.acm.org
Differential topology, and specifically Morse theory, provide a suitable setting for formalizing
and solving several problems related to shape analysis. The fundamental idea behind …