Functional aptamers and aptazymes in biotechnology, diagnostics, and therapy

M Famulok, JS Hartig, G Mayer - Chemical reviews, 2007 - ACS Publications
Aptamers are single-stranded nucleic acid molecules that possess properties comparable to
those of protein monoclonal antibodies, and thus are clear alternatives to long established …

RNA synthetic biology

FJ Isaacs, DJ Dwyer, JJ Collins - Nature biotechnology, 2006 - nature.com
RNA molecules play important and diverse regulatory roles in the cell by virtue of their
interaction with other nucleic acids, proteins and small molecules. Inspired by this natural …

Versatile RNA-sensing transcriptional regulators for engineering genetic networks

JB Lucks, L Qi, VK Mutalik, D Wang… - Proceedings of the …, 2011 - National Acad Sciences
The widespread natural ability of RNA to sense small molecules and regulate genes has
become an important tool for synthetic biology in applications as diverse as environmental …

De novo design of a synthetic riboswitch that regulates transcription termination

M Wachsmuth, S Findeiß, N Weissheimer… - Nucleic acids …, 2013 - academic.oup.com
Riboswitches are regulatory RNA elements typically located in the 5′-untranslated region
of certain mRNAs and control gene expression at the level of transcription or translation …

Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription–translation (TX-TL) systems

MK Takahashi, J Chappell, CA Hayes… - ACS synthetic …, 2015 - ACS Publications
RNA regulators are emerging as powerful tools to engineer synthetic genetic networks or
rewire existing ones. A potential strength of RNA networks is that they may be able to …

[HTML][HTML] Engineered riboswitches: expanding researchers' toolbox with synthetic RNA regulators

A Wittmann, B Suess - FEBS letters, 2012 - Elsevier
Riboswitches are natural RNA-based genetic switches that sense small-molecule
metabolites and regulate in response the expression of the corresponding metabolic genes …

Selection of an improved RNA polymerase ribozyme with superior extension and fidelity

HS Zaher, PJ Unrau - Rna, 2007 - rnajournal.cshlp.org
Our current understanding of biology suggests that early life relied predominantly on RNA
for catalysis and replication. Here, we report the isolation of an RNA polymerase ribozyme …

saRNA-guided Ago2 targets the RITA complex to promoters to stimulate transcription

V Portnoy, SHS Lin, KH Li, A Burlingame, ZH Hu, H Li… - Cell research, 2016 - nature.com
Small activating RNAs (saRNAs) targeting specific promoter regions are able to stimulate
gene expression at the transcriptional level, a phenomenon known as RNA activation …

Directed evolution: selecting today's biocatalysts

LG Otten, WJ Quax - Biomolecular engineering, 2005 - Elsevier
Directed evolution has become a full-grown tool in molecular biology nowadays. The
methods that are involved in creating a mutant library are extensive and can be divided into …

A modular strategy for engineering orthogonal chimeric RNA transcription regulators

MK Takahashi, JB Lucks - Nucleic acids research, 2013 - academic.oup.com
Antisense RNA transcription attenuators are a key component of the synthetic biology
toolbox, with their ability to serve as building blocks for both signal integration logic circuits …