[HTML][HTML] Omicron variant (B. 1.1. 529) and its sublineages: What do we know so far amid the emergence of recombinant variants of SARS-CoV-2?
M Dhawan, ARA Saied, S Mitra, FA Alhumaydhi… - Biomedicine & …, 2022 - Elsevier
Since the start of the COVID-19 pandemic, numerous variants of SARS-CoV-2 have been
reported worldwide. The advent of variants of concern (VOCs) raises severe concerns amid …
reported worldwide. The advent of variants of concern (VOCs) raises severe concerns amid …
COVID-19: challenges of viral variants
The COVID-19 pandemic has been accompanied by SARS-CoV-2 evolution and
emergence of viral variants that have far exceeded initial expectations. Five major variants of …
emergence of viral variants that have far exceeded initial expectations. Five major variants of …
Convergent evolution of SARS-CoV-2 Omicron subvariants leading to the emergence of BQ. 1.1 variant
In late 2022, various Omicron subvariants emerged and cocirculated worldwide. These
variants convergently acquired amino acid substitutions at critical residues in the spike …
variants convergently acquired amino acid substitutions at critical residues in the spike …
Deep-learning-enabled protein–protein interaction analysis for prediction of SARS-CoV-2 infectivity and variant evolution
Host–pathogen interactions and pathogen evolution are underpinned by protein–protein
interactions between viral and host proteins. An understanding of how viral variants affect …
interactions between viral and host proteins. An understanding of how viral variants affect …
Deep mutational scans for ACE2 binding, RBD expression, and antibody escape in the SARS-CoV-2 Omicron BA. 1 and BA. 2 receptor-binding domains
SARS-CoV-2 continues to acquire mutations in the spike receptor-binding domain (RBD)
that impact ACE2 receptor binding, folding stability, and antibody recognition. Deep …
that impact ACE2 receptor binding, folding stability, and antibody recognition. Deep …
Contributions of adaptation and purifying selection to SARS-CoV-2 evolution
RA Neher - Virus Evolution, 2022 - academic.oup.com
Continued evolution and adaptation of SARS-CoV-2 has led to more transmissible and
immune-evasive variants with profound impacts on the course of the pandemic. Here I …
immune-evasive variants with profound impacts on the course of the pandemic. Here I …
Omicron Spike protein has a positive electrostatic surface that promotes ACE2 recognition and antibody escape
HH Gan, J Zinno, F Piano, KC Gunsalus - Frontiers in Virology, 2022 - frontiersin.org
High transmissibility is a hallmark of the Omicron variant of SARS-CoV-2. Understanding the
molecular determinants of Omicron's transmissibility will impact development of intervention …
molecular determinants of Omicron's transmissibility will impact development of intervention …
Coordinated evolution at amino acid sites of sars-cov-2 spike
AD Neverov, G Fedonin, A Popova, D Bykova… - Elife, 2023 - elifesciences.org
SARS-CoV-2 has adapted in a stepwise manner, with multiple beneficial mutations
accumulating in a rapid succession at origins of VOCs, and the reasons for this are unclear …
accumulating in a rapid succession at origins of VOCs, and the reasons for this are unclear …
Exploring and learning the universe of protein allostery using artificial intelligence augmented biophysical and computational approaches
Allosteric mechanisms are commonly employed regulatory tools used by proteins to
orchestrate complex biochemical processes and control communications in cells. The …
orchestrate complex biochemical processes and control communications in cells. The …
Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein and potentially drive the genesis of Omicron variants
Q Yan, X Gao, B Liu, R Hou, P He, Y Ma… - Nature …, 2024 - nature.com
Continued evolution of SARS-CoV-2 generates variants to challenge antibody immunity
established by infection and vaccination. A connection between population immunity and …
established by infection and vaccination. A connection between population immunity and …