Statistics and related topics in single-molecule biophysics

H Qian, SC Kou - Annual review of statistics and its application, 2014 - annualreviews.org
Since the universal acceptance of atoms and molecules as the fundamental constituents of
matter in the early-twentieth century, molecular physics, chemistry, and molecular biology …

Stepwise signal extraction via marginal likelihood

C Du, CLM Kao, SC Kou - Journal of the American Statistical …, 2016 - Taylor & Francis
This article studies the estimation of a stepwise signal. To determine the number and
locations of change-points of the stepwise signal, we formulate a maximum marginal …

Structural conditions on complex networks for the Michaelis–Menten input–output response

F Wong, A Dutta, D Chowdhury… - Proceedings of the …, 2018 - National Acad Sciences
The Michaelis–Menten (MM) fundamental formula describes how the rate of enzyme
catalysis depends on substrate concentration. The familiar hyperbolic relationship was …

Statistical methodology in single-molecule experiments

C Du, SC Kou - Statistical Science, 2020 - JSTOR
Toward the last quarter of the 20th century, the emergence of single-molecule experiments
enabled scientists to track and study individual molecules' dynamic properties in real time …

Single turnover measurements of nanoparticle catalysis analyzed with dwell time correlation functions and constrained mean dwell times

MA Ochoa, P Chen, RF Loring - The Journal of Physical Chemistry …, 2013 - ACS Publications
Single turnover measurements of a fluorogenic reaction at the surface of a nanoparticle
provide a detailed view of reaction dynamics at a catalyst with multiple heterogeneous active …

[HTML][HTML] Exploration of the spontaneous fluctuating activity of single enzyme molecules

A Schwabe, TR Maarleveld, FJ Bruggeman - FEBS letters, 2013 - Elsevier
Single enzyme molecules display inevitable, stochastic fluctuations in their catalytic activity.
In metabolism, for instance, the stochastic activity of individual enzymes is averaged out due …

Application of Markov Chains in the Biology

N Stojkovic, L Koceva Lazarova, A Stojanova - 2023 - eprints.ugd.edu.mk
Markov chain is a random process with Markov characteristics, which exists in the discrete
index set and state space in probability theory and mathematical statistics. Markov chains …

Dilation of stochastic matrices by coarse graining

HJ Schmidt - arXiv preprint arXiv:2106.03513, 2021 - arxiv.org
We consider two different ways of representing stochastic matrices by bi-stochastic ones
acting on a larger probability space, referred to as``dilation by uniform coarse graining" …

[PDF][PDF] Supporting Information: Structural conditions on complex networks for the Michaelis-Menten input-output response

F Wonga, A Duttac, D Chowdhuryc, J Gunawardenaa - vcp.med.harvard.edu
In this Supporting Information, we first provide background on the linear framework and then
restate and give full proofs of Props. 1-4 from the main text. We also state and prove Prop …

[HTML][HTML] Lattice model of spatial correlations in catalysis

RF Loring - The Journal of Chemical Physics, 2016 - pubs.aip.org
Optically detected single-turnover measurements of biological and inorganic catalysts
provide a detailed picture of structural and dynamical influences on catalytic activity …