Alternative splicing and protein diversity: plants versus animals

S Chaudhary, W Khokhar, I Jabre, ASN Reddy… - Frontiers in plant …, 2019 - frontiersin.org
Plants, unlike animals, exhibit a very high degree of plasticity in their growth and
development and employ diverse strategies to cope with the variations during diurnal cycles …

Brachypodium: A Monocot Grass Model Genus for Plant Biology

KBG Scholthof, S Irigoyen, P Catalan… - The Plant …, 2018 - academic.oup.com
The genus Brachypodium represents a model system that is advancing our knowledge of
the biology of grasses, including small grains, in the postgenomics era. The most widely …

A survey of the sorghum transcriptome using single-molecule long reads

SE Abdel-Ghany, M Hamilton, JL Jacobi… - Nature …, 2016 - nature.com
Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute
to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in …

Chromosome-level reference genome and alternative splicing atlas of moso bamboo (Phyllostachys edulis)

H Zhao, Z Gao, L Wang, J Wang, S Wang, B Fei… - …, 2018 - academic.oup.com
Background Bamboo is one of the most important nontimber forestry products worldwide.
However, a chromosome-level reference genome is lacking, and an evolutionary view of …

Genome-wide analysis of alternative splicing during development and drought stress in maize

SR Thatcher, ON Danilevskaya, X Meng… - Plant …, 2016 - academic.oup.com
Alternative splicing plays a crucial role in plant development as well as stress responses.
Although alternative splicing has been studied during development and in response to …

Global identification of alternative splicing via comparative analysis of SMRT‐and Illumina‐based RNA‐seq in strawberry

Y Li, C Dai, C Hu, Z Liu, C Kang - The Plant Journal, 2017 - Wiley Online Library
Alternative splicing (AS) is a key post‐transcriptional regulatory mechanism, yet little
information is known about its roles in fruit crops. Here, AS was globally analyzed in the wild …

A rust fungus effector directly binds plant pre‐mRNA splice site to reprogram alternative splicing and suppress host immunity

C Tang, Q Xu, J Zhao, M Yue, J Wang… - Plant Biotechnology …, 2022 - Wiley Online Library
Alternative splicing (AS) is a crucial post‐transcriptional regulatory mechanism in plant
resistance. However, whether and how plant pathogens target splicing in their host remains …

Phytophthora effectors modulate genome-wide alternative splicing of host mRNAs to reprogram plant immunity

J Huang, X Lu, H Wu, Y Xie, Q Peng, L Gu, J Wu… - Molecular plant, 2020 - cell.com
Alternative splicing (AS) of pre-mRNAs increases transcriptome and proteome diversity,
regulates gene expression through multiple mechanisms, and plays important roles in plant …

Translatomics: the global view of translation

J Zhao, B Qin, R Nikolay, CMT Spahn… - International journal of …, 2019 - mdpi.com
In all kingdoms of life, proteins are synthesized by ribosomes in a process referred to as
translation. The amplitude of translational regulation exceeds the sum of transcription …

Potential use of the Pteris vittata arsenic hyperaccumulation-regulation network for phytoremediation

H Yan, Y Gao, L Wu, L Wang, T Zhang, C Dai… - Journal of hazardous …, 2019 - Elsevier
Arsenic accumulation in soil is a global problem typically addressed using phytoremediation
methods. Pteris vittata, a model arsenic hyperaccumulator, has great potential as a …