Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
The future of parentage analysis: From microsatellites to SNPs and beyond
SP Flanagan, AG Jones - Molecular ecology, 2019 - Wiley Online Library
Parentage analysis is a cornerstone of molecular ecology that has delivered fundamental
insights into behaviour, ecology and evolution. Microsatellite markers have long been the …
insights into behaviour, ecology and evolution. Microsatellite markers have long been the …
ipyrad: Interactive assembly and analysis of RADseq datasets
DAR Eaton, I Overcast - Bioinformatics, 2020 - academic.oup.com
Abstract Summary ipyrad is a free and open source tool for assembling and analyzing
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
restriction site-associated DNA sequence datasets using de novo and/or reference-based …
Deriving genotypes from RAD-seq short-read data using Stacks
NC Rochette, JM Catchen - Nature protocols, 2017 - nature.com
Restriction site-associated DNA sequencing (RAD-seq) allows for the genome-wide
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
discovery and genotyping of single-nucleotide polymorphisms in hundreds of individuals at …
Considerations for maximizing the adaptive potential of restored coral populations in the western Atlantic
Active coral restoration typically involves two interventions: crossing gametes to facilitate
sexual larval propagation; and fragmenting, growing, and outplanting adult colonies to …
sexual larval propagation; and fragmenting, growing, and outplanting adult colonies to …
Guidelines for planning genomic assessment and monitoring of locally adaptive variation to inform species conservation
Identifying and monitoring locally adaptive genetic variation can have direct utility for
conserving species at risk, especially when management may include actions such as …
conserving species at risk, especially when management may include actions such as …
Adapterama I: universal stubs and primers for 384 unique dual-indexed or 147,456 combinatorially-indexed Illumina libraries (iTru & iNext)
Massively parallel DNA sequencing offers many benefits, but major inhibitory cost factors
include:(1) start-up (ie, purchasing initial reagents and equipment);(2) buyin (ie, getting the …
include:(1) start-up (ie, purchasing initial reagents and equipment);(2) buyin (ie, getting the …
Practical considerations for plant phylogenomics
MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
The utility of single nucleotide polymorphism (SNP) data in phylogenetics
Resolving the genealogy of life—the phylogenetic relationships that describe the
evolutionary history of species—remains one of the great challenges of systematic biology …
evolutionary history of species—remains one of the great challenges of systematic biology …
The future is now: Amplicon sequencing and sequence capture usher in the conservation genomics era
The genomics revolution has initiated a new era of population genetics where genome‐wide
data are frequently used to understand complex patterns of population structure and …
data are frequently used to understand complex patterns of population structure and …