The road to fully programmable protein catalysis
The ability to design efficient enzymes from scratch would have a profound effect on
chemistry, biotechnology and medicine. Rapid progress in protein engineering over the past …
chemistry, biotechnology and medicine. Rapid progress in protein engineering over the past …
[HTML][HTML] Biocatalysis
Biocatalysis has become an important aspect of modern organic synthesis, both in
academia and across the chemical and pharmaceutical industries. Its success has been …
academia and across the chemical and pharmaceutical industries. Its success has been …
Machine learning for chemical reactions
M Meuwly - Chemical Reviews, 2021 - ACS Publications
Machine learning (ML) techniques applied to chemical reactions have a long history. The
present contribution discusses applications ranging from small molecule reaction dynamics …
present contribution discusses applications ranging from small molecule reaction dynamics …
Improving protein expression, stability, and function with ProteinMPNN
KH Sumida, R Núñez-Franco, I Kalvet… - Journal of the …, 2024 - ACS Publications
Natural proteins are highly optimized for function but are often difficult to produce at a scale
suitable for biotechnological applications due to poor expression in heterologous systems …
suitable for biotechnological applications due to poor expression in heterologous systems …
A backbone-centred energy function of neural networks for protein design
A protein backbone structure is designable if a substantial number of amino acid sequences
exist that autonomously fold into it,. It has been suggested that the designability of …
exist that autonomously fold into it,. It has been suggested that the designability of …
Direct generation of protein conformational ensembles via machine learning
Dynamics and conformational sampling are essential for linking protein structure to
biological function. While challenging to probe experimentally, computer simulations are …
biological function. While challenging to probe experimentally, computer simulations are …
A genetically encoded F-19 NMR probe reveals the allosteric modulation mechanism of cannabinoid receptor 1
X Wang, D Liu, L Shen, F Li, Y Li, L Yang… - Journal of the …, 2021 - ACS Publications
Due to the lack of genetically encoded probes for fluorine-19 nuclear magnetic resonance
spectroscopy (19F NMR), its utility for probing eukaryotic membrane protein dynamics is …
spectroscopy (19F NMR), its utility for probing eukaryotic membrane protein dynamics is …
Ratcheting synthesis
Synthetic chemistry has traditionally relied on reactions between reactants of high chemical
potential and transformations that proceed energetically downhill to either a global or local …
potential and transformations that proceed energetically downhill to either a global or local …
New Insights into the Cooperativity and Dynamics of Dimeric Enzymes
KW Chen, TY Sun, YD Wu - Chemical Reviews, 2023 - ACS Publications
A survey of protein databases indicates that the majority of enzymes exist in oligomeric
forms, with about half of those found in the UniProt database being homodimeric …
forms, with about half of those found in the UniProt database being homodimeric …
Catalytic cycle of formate dehydrogenase captured by single-molecule conductance
Understanding the mechanisms and kinetics of enzymatic reactions is essential for studies
of life science and for bioengineering. Here the different reaction states in the catalytic cycle …
of life science and for bioengineering. Here the different reaction states in the catalytic cycle …