Global identification of SWI/SNF targets reveals compensation by EP400

BJE Martin, EF Ablondi, C Goglia, CA Mimoso… - Cell, 2023 - cell.com
Mammalian SWI/SNF chromatin remodeling complexes move and evict nucleosomes at
gene promoters and enhancers to modulate DNA access. Although SWI/SNF subunits are …

[HTML][HTML] Human SMARCA5 is continuously required to maintain nucleosome spacing

ML Bomber, J Wang, Q Liu, KR Barnett, HM Layden… - Molecular cell, 2023 - cell.com
Genetic models suggested that SMARCA5 was required for DNA-templated events including
transcription, DNA replication, and DNA repair. We engineered a degron tag into the …

Regulation of chromatin organization during animal regeneration

X Jia, W Lin, W Wang - Cell Regeneration, 2023 - Springer
Activation of regeneration upon tissue damages requires the activation of many
developmental genes responsible for cell proliferation, migration, differentiation, and tissue …

The regulation of totipotency transcription: Perspective from in vitro and in vivo totipotency

H Xu, H Liang - Frontiers in Cell and Developmental Biology, 2022 - frontiersin.org
Totipotency represents the highest developmental potency. By definition, totipotent stem
cells are capable of giving rise to all embryonic and extraembryonic cell types. In …

Functional dissection of PRC1 subunits RYBP and YAF2 during neural differentiation of embryonic stem cells

Y Liu, G Hu, S Yang, M Yao, Z Liu, C Yan… - Nature …, 2023 - nature.com
Abstract Polycomb repressive complex 1 (PRC1) comprises two different complexes: CBX-
containing canonical PRC1 (cPRC1) and RYBP/YAF2-containing variant PRC1 (vPRC1) …

The PTM profiling of CTCF reveals the regulation of 3D chromatin structure by O-GlcNAcylation

X Tang, P Zeng, K Liu, L Qing, Y Sun, X Liu… - Nature …, 2024 - nature.com
Abstract CCCTC-binding factor (CTCF), a ubiquitously expressed and highly conserved
protein, is known to play a critical role in chromatin structure. Post-translational modifications …

CTCF mutation at R567 causes developmental disorders via 3D genome rearrangement and abnormal neurodevelopment

J Zhang, G Hu, Y Lu, H Ren, Y Huang, Y Wen… - Nature …, 2024 - nature.com
The three-dimensional genome structure organized by CTCF is required for development.
Clinically identified mutations in CTCF have been linked to adverse developmental …

The esBAF and ISWI nucleosome remodeling complexes influence occupancy of overlapping dinucleosomes and fragile nucleosomes in murine embryonic stem cells

DC Klein, K Troy, SA Tripplehorn, SJ Hainer - BMC genomics, 2023 - Springer
Background Nucleosome remodeling factors regulate the occupancy and positioning of
nucleosomes genome-wide through ATP-driven DNA translocation. While many …

Multiomic analysis of cohesin reveals that ZBTB transcription factors contribute to chromatin interactions

R Wang, Q Xu, C Wang, K Tian, H Wang… - Nucleic Acids …, 2023 - academic.oup.com
One bottleneck in understanding the principles of 3D chromatin structures is caused by the
paucity of known regulators. Cohesin is essential for 3D chromatin organization, and its …

A tracheal aspirate-derived airway basal cell model reveals a proinflammatory epithelial defect in congenital diaphragmatic hernia

R Wagner, GM Amonkar, W Wang, JE Shui… - American Journal of …, 2023 - atsjournals.org
Rationale: Congenital diaphragmatic hernia (CDH) is characterized by incomplete closure of
the diaphragm and lung hypoplasia. The pathophysiology of lung defects in CDH is poorly …