Genome-scale metabolic modeling of the human microbiome in the era of personalized medicine

A Heinken, A Basile, J Hertel… - Annual review of …, 2021 - annualreviews.org
The human microbiome plays an important role in human health and disease. Meta-omics
analyses provide indispensable data for linking changes in microbiome composition and …

[HTML][HTML] Multiscale analysis of independent Alzheimer's cohorts finds disruption of molecular, genetic, and clinical networks by human herpesvirus

B Readhead, JV Haure-Mirande, CC Funk… - Neuron, 2018 - cell.com
Investigators have long suspected that pathogenic microbes might contribute to the onset
and progression of Alzheimer's disease (AD) although definitive evidence has not been …

Genetic regulation of vertebrate forebrain development by homeobox genes

RF Leung, AM George, EM Roussel, MC Faux… - Frontiers in …, 2022 - frontiersin.org
Forebrain development in vertebrates is regulated by transcription factors encoded by
homeobox, bHLH and forkhead gene families throughout the progressive and overlapping …

Metabolic network analysis reveals altered bile acid synthesis and metabolism in Alzheimer's disease

P Baloni, CC Funk, J Yan, JT Yurkovich… - Cell Reports …, 2020 - cell.com
Increasing evidence suggests Alzheimer's disease (AD) pathophysiology is influenced by
primary and secondary bile acids, the end product of cholesterol metabolism. We analyze …

SUPERGNOVA: local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits

Y Zhang, Q Lu, Y Ye, K Huang, W Liu, Y Wu, X Zhong… - Genome biology, 2021 - Springer
Local genetic correlation quantifies the genetic similarity of complex traits in specific
genomic regions. However, accurate estimation of local genetic correlation remains …

A single-cell genomic atlas for maturation of the human cerebellum during early childhood

SA Ament, M Cortes-Gutierrez, BR Herb… - Science translational …, 2023 - science.org
Inflammation early in life is a clinically established risk factor for autism spectrum disorders
and schizophrenia, yet the impact of inflammation on human brain development is poorly …

Gene biomarker discovery at different stages of Alzheimer using gene co-expression network approach

NS Soleimani Zakeri, S Pashazadeh, H MotieGhader - Scientific reports, 2020 - nature.com
Alzheimer's disease (AD) is a chronic neurodegenerative disorder. It is the most common
type of dementia that has remained as an incurable disease in the world, which destroys the …

Single-nucleus RNA-seq reveals dysregulation of striatal cell identity due to huntington's disease mutations

S Malaiya, M Cortes-Gutierrez, BR Herb… - Journal of …, 2021 - Soc Neuroscience
Huntington's disease (HD) is a dominantly inherited neurodegenerative disorder caused by
a trinucleotide expansion in exon 1 of the huntingtin (HTT) gene. Cell death in HD occurs …

Recapitulation of perturbed striatal gene expression dynamics of donors' brains with ventral forebrain organoids derived from the same individuals with schizophrenia

T Sawada, AR Barbosa, B Araujo… - American Journal of …, 2024 - psychiatryonline.org
Objective: Schizophrenia is a brain disorder that originates during neurodevelopment and
has complex genetic and environmental etiologies. Despite decades of clinical evidence of …

Divergent brain gene expression patterns associate with distinct cell-specific tau neuropathology traits in progressive supranuclear palsy

M Allen, X Wang, DJ Serie, SL Strickland… - Acta …, 2018 - Springer
Progressive supranuclear palsy (PSP) is a neurodegenerative parkinsonian disorder
characterized by tau pathology in neurons and glial cells. Transcriptional regulation has …