Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
Abstract The National Institute of Allergy and Infectious Diseases (NIAID) established the
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Bioinformatics Resource Center (BRC) program to assist researchers with analyzing the …
Genomic-scale prioritization of drug targets: the TDR Targets database
The increasing availability of genomic data for pathogens that cause tropical diseases has
created new opportunities for drug discovery and development. However, if the potential of …
created new opportunities for drug discovery and development. However, if the potential of …
Achievements and new knowledge unraveled by metagenomic approaches
C Simon, R Daniel - Applied microbiology and biotechnology, 2009 - Springer
Metagenomics has paved the way for cultivation-independent assessment and exploitation
of microbial communities present in complex ecosystems. In recent years, significant …
of microbial communities present in complex ecosystems. In recent years, significant …
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
Abstract The PathoSystems Resource Integration Center (PATRIC) is the bacterial
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
Bioinformatics Resource Center funded by the National Institute of Allergy and Infectious …
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
Abstract In 2004, the SEED (http://pubseed. theseed. org/) was created to provide consistent
and accurate genome annotations across thousands of genomes and as a platform for …
and accurate genome annotations across thousands of genomes and as a platform for …
The metagenomics RAST server–a public resource for the automatic phylogenetic and functional analysis of metagenomes
Background Random community genomes (metagenomes) are now commonly used to
study microbes in different environments. Over the past few years, the major challenge …
study microbes in different environments. Over the past few years, the major challenge …
The RAST Server: rapid annotations using subsystems technology
Background The number of prokaryotic genome sequences becoming available is growing
steadily and is growing faster than our ability to accurately annotate them. Description We …
steadily and is growing faster than our ability to accurately annotate them. Description We …
PATRIC, the bacterial bioinformatics database and analysis resource
Abstract The Pathosystems Resource Integration Center (PATRIC) is the all-bacterial
Bioinformatics Resource Center (BRC)(http://www. patricbrc. org). A joint effort by two of the …
Bioinformatics Resource Center (BRC)(http://www. patricbrc. org). A joint effort by two of the …
Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
Pathway Tools is a production-quality software environment for creating a type of model-
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
organism database called a Pathway/Genome Database (PGDB). A PGDB such as EcoCyc …
Application of high-throughput sequencing technologies and analytical tools for pathogen detection in urban water systems: Progress and future perspectives
The ubiquitous presence of pathogenic microorganisms, such as viruses, bacteria, fungi,
and protozoa, in urban water systems poses a significant risk to public health. The …
and protozoa, in urban water systems poses a significant risk to public health. The …