Transposable element domestication as an adaptation to evolutionary conflicts
Transposable elements (TEs) are selfish genetic units that typically encode proteins that
enable their proliferation in the genome and spread across individual hosts. Here we review …
enable their proliferation in the genome and spread across individual hosts. Here we review …
Constitutive heterochromatin in eukaryotic genomes: A mine of transposable elements
RM Marsano, P Dimitri - Cells, 2022 - mdpi.com
Transposable elements (TEs) are abundant components of constitutive heterochromatin of
the most diverse evolutionarily distant organisms. TEs enrichment in constitutive …
the most diverse evolutionarily distant organisms. TEs enrichment in constitutive …
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns
B Saudemont, A Popa, JL Parmley, V Rocher… - Genome biology, 2017 - Springer
Background Most eukaryotic genes are subject to alternative splicing (AS), which may
contribute to the production of protein variants or to the regulation of gene expression via …
contribute to the production of protein variants or to the regulation of gene expression via …
ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology
O Arnaiz, E Meyer, L Sperling - Nucleic acids research, 2020 - academic.oup.com
Abstract ParameciumDB (https://paramecium. i2bc. paris-saclay. fr) is a community model
organism database for the genome and genetics of the ciliate Paramecium. ParameciumDB …
organism database for the genome and genetics of the ciliate Paramecium. ParameciumDB …
Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements
C Miró-Pina, O Charmant, T Kawaguchi, D Holoch… - Developmental cell, 2022 - cell.com
Summary Polycomb repressive complex 2 (PRC2) maintains transcriptionally silent genes in
a repressed state via deposition of histone H3K27-trimethyl (me3) marks. PRC2 has also …
a repressed state via deposition of histone H3K27-trimethyl (me3) marks. PRC2 has also …
Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium
J Bischerour, S Bhullar, C Denby Wilkes, V Régnier… - Elife, 2018 - elifesciences.org
The domestication of transposable elements has repeatedly occurred during evolution and
domesticated transposases have often been implicated in programmed genome …
domesticated transposases have often been implicated in programmed genome …
Coupling DNA damage and repair: an essential safeguard during programmed DNA double-strand breaks?
M Bétermier, V Borde, JP de Villartay - Trends in Cell Biology, 2020 - cell.com
DNA double-strand breaks (DSBs) are the most toxic DNA lesions given their oncogenic
potential. Nevertheless, programmed DSBs (prDSBs) contribute to several biological …
potential. Nevertheless, programmed DSBs (prDSBs) contribute to several biological …
[HTML][HTML] Roles of noncoding RNAs in ciliate genome architecture
SE Allen, M Nowacki - Journal of molecular biology, 2020 - Elsevier
Ciliates are an interesting model system for investigating diverse functions of noncoding
RNAs, especially in genome defence pathways. During sexual development, the ciliate …
RNAs, especially in genome defence pathways. During sexual development, the ciliate …
Paramecium epigenetics in development and proliferation
The term epigenetics is used for any layer of genetic information aside from the DNA base‐
sequence information. Mammalian epigenetic research increased our understanding of …
sequence information. Mammalian epigenetic research increased our understanding of …
Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination
A Abello, V Régnier, O Arnaiz, R Le Bars… - PLoS …, 2020 - journals.plos.org
Gene duplication and diversification drive the emergence of novel functions during
evolution. Because of whole genome duplications, ciliates from the Paramecium aurelia …
evolution. Because of whole genome duplications, ciliates from the Paramecium aurelia …