Transposable element domestication as an adaptation to evolutionary conflicts

D Jangam, C Feschotte, E Betrán - Trends in Genetics, 2017 - cell.com
Transposable elements (TEs) are selfish genetic units that typically encode proteins that
enable their proliferation in the genome and spread across individual hosts. Here we review …

Constitutive heterochromatin in eukaryotic genomes: A mine of transposable elements

RM Marsano, P Dimitri - Cells, 2022 - mdpi.com
Transposable elements (TEs) are abundant components of constitutive heterochromatin of
the most diverse evolutionarily distant organisms. TEs enrichment in constitutive …

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

B Saudemont, A Popa, JL Parmley, V Rocher… - Genome biology, 2017 - Springer
Background Most eukaryotic genes are subject to alternative splicing (AS), which may
contribute to the production of protein variants or to the regulation of gene expression via …

ParameciumDB 2019: integrating genomic data across the genus for functional and evolutionary biology

O Arnaiz, E Meyer, L Sperling - Nucleic acids research, 2020 - academic.oup.com
Abstract ParameciumDB (https://paramecium. i2bc. paris-saclay. fr) is a community model
organism database for the genome and genetics of the ciliate Paramecium. ParameciumDB …

Paramecium Polycomb repressive complex 2 physically interacts with the small RNA-binding PIWI protein to repress transposable elements

C Miró-Pina, O Charmant, T Kawaguchi, D Holoch… - Developmental cell, 2022 - cell.com
Summary Polycomb repressive complex 2 (PRC2) maintains transcriptionally silent genes in
a repressed state via deposition of histone H3K27-trimethyl (me3) marks. PRC2 has also …

Six domesticated PiggyBac transposases together carry out programmed DNA elimination in Paramecium

J Bischerour, S Bhullar, C Denby Wilkes, V Régnier… - Elife, 2018 - elifesciences.org
The domestication of transposable elements has repeatedly occurred during evolution and
domesticated transposases have often been implicated in programmed genome …

Coupling DNA damage and repair: an essential safeguard during programmed DNA double-strand breaks?

M Bétermier, V Borde, JP de Villartay - Trends in Cell Biology, 2020 - cell.com
DNA double-strand breaks (DSBs) are the most toxic DNA lesions given their oncogenic
potential. Nevertheless, programmed DSBs (prDSBs) contribute to several biological …

[HTML][HTML] Roles of noncoding RNAs in ciliate genome architecture

SE Allen, M Nowacki - Journal of molecular biology, 2020 - Elsevier
Ciliates are an interesting model system for investigating diverse functions of noncoding
RNAs, especially in genome defence pathways. During sexual development, the ciliate …

Paramecium epigenetics in development and proliferation

F Drews, J Boenigk, M Simon - Journal of Eukaryotic …, 2022 - Wiley Online Library
The term epigenetics is used for any layer of genetic information aside from the DNA base‐
sequence information. Mammalian epigenetic research increased our understanding of …

Functional diversification of Paramecium Ku80 paralogs safeguards genome integrity during precise programmed DNA elimination

A Abello, V Régnier, O Arnaiz, R Le Bars… - PLoS …, 2020 - journals.plos.org
Gene duplication and diversification drive the emergence of novel functions during
evolution. Because of whole genome duplications, ciliates from the Paramecium aurelia …