Applications of isothermal titration calorimetry in pure and applied research—survey of the literature from 2010

R Ghai, RJ Falconer, BM Collins - Journal of Molecular …, 2012 - Wiley Online Library
Isothermal titration calorimetry (ITC) is a biophysical technique for measuring the formation
and dissociation of molecular complexes and has become an invaluable tool in many …

A systematic compilation of human SH3 domains: a versatile superfamily in cellular signaling

M Mehrabipour, NSK Jasemi, R Dvorsky… - Cells, 2023 - mdpi.com
SRC homology 3 (SH3) domains are fundamental modules that enable the assembly of
protein complexes through physical interactions with a pool of proline-rich/noncanonical …

Rapid quantification of protein-ligand binding via 19F NMR lineshape analysis

SS Stadmiller, JS Aguilar, CA Waudby, GJ Pielak - Biophysical journal, 2020 - cell.com
Fluorine incorporation is ideally suited to many NMR techniques, and incorporation of
fluorine into proteins and fragment libraries for drug discovery has become increasingly …

Site selective azo coupling for peptide cyclization and affinity labeling of an SH3 protein

F Huang, Y Nie, F Ye, M Zhang, J Xia - Bioconjugate Chemistry, 2015 - ACS Publications
A key challenge in bioconjugation is to control the site selectivity of the reaction. Chemical
reagents often react with proteineous chemical groups without showing preference to their …

Energetics of Src homology domain interactions in receptor tyrosine kinase-mediated signaling

JE Ladbury, ST Arold - Methods in enzymology, 2011 - Elsevier
Intracellular signaling from receptor tyrosine kinases (RTK) on extracellular stimulation is
fundamental to all cellular processes. The protein–protein interactions which form the basis …

Binding site plasticity in viral PPxY Late domain recognition by the third WW domain of human NEDD4

M Iglesias-Bexiga, A Palencia, C Corbi-Verge… - Scientific Reports, 2019 - nature.com
The recognition of PPxY viral Late domains by the third WW domain of the HECT-E3
ubiquitin ligase NEDD4 (hNEDD4-WW3) is essential for the completion of the budding …

Structural and thermodynamic analysis of HIV-1 fusion inhibition using small gp41 mimetic proteins

S Jurado, M Cano-Muñoz, B Morel, S Standoli… - Journal of molecular …, 2019 - Elsevier
Abstract Development of effective inhibitors of the fusion between HIV-1 and the host cell
membrane mediated by gp41 continues to be a grand challenge due to an incomplete …

Binding mechanism of the N-terminal SH3 domain of CrkII and proline-rich motifs in cAbl

VS Bhatt, D Zeng, I Krieger, JC Sacchettini, JH Cho - Biophysical journal, 2016 - cell.com
The N-terminal Src homology 3 (nSH3) domain of a signaling adaptor protein, CT-10
regulator of kinase II (CrkII), recognizes proline-rich motifs (PRMs) of binding partners, such …

[HTML][HTML] Phage display identification of nanomolar ligands for human NEDD4-WW3: Energetic and dynamic implications for the development of broad-spectrum …

F Castillo, C Corbi-Verge, J Murciano-Calles… - International Journal of …, 2022 - Elsevier
The recognition of PPxY viral Late domains by the third WW domain of the human HECT-E3
ubiquitin ligase NEDD4 (NEDD4-WW3) is essential for the budding of many viruses …

Improving Speed and Affordability without Compromising Accuracy: Standard Binding Free-Energy Calculations Using an Enhanced Sampling Algorithm, Multiple …

M Blazhynska… - Journal of Chemical …, 2023 - ACS Publications
Accurate evaluation of protein–ligand binding free energies in silico is of paramount
importance for understanding the mechanisms of biological regulation and providing a …