Microbial diversity in extreme environments
WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …
survive and thrive in extreme environments. These unique and reduced-complexity …
Innovations to culturing the uncultured microbial majority
Despite the surge of microbial genome data, experimental testing is important to confirm
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …
inferences about the cell biology, ecological roles and evolution of microorganisms. As the …
A standardized archaeal taxonomy for the Genome Taxonomy Database
The accrual of genomic data from both cultured and uncultured microorganisms provides
new opportunities to develop systematic taxonomies based on evolutionary relationships …
new opportunities to develop systematic taxonomies based on evolutionary relationships …
Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes
In the ongoing debates about eukaryogenesis—the series of evolutionary events leading to
the emergence of the eukaryotic cell from prokaryotic ancestors—members of the Asgard …
the emergence of the eukaryotic cell from prokaryotic ancestors—members of the Asgard …
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants
The number and diversity of known CRISPR–Cas systems have substantially increased in
recent years. Here, we provide an updated evolutionary classification of CRISPR–Cas …
recent years. Here, we provide an updated evolutionary classification of CRISPR–Cas …
The transporter classification database (TCDB): 2021 update
MH Saier Jr, VS Reddy… - Nucleic acids …, 2021 - academic.oup.com
Abstract The Transporter Classification Database (TCDB; tcdb. org) is a freely accessible
reference resource, which provides functional, structural, mechanistic, medical and …
reference resource, which provides functional, structural, mechanistic, medical and …
Isolation of an archaeon at the prokaryote–eukaryote interface
The origin of eukaryotes remains unclear,,–. Current data suggest that eukaryotes may have
emerged from an archaeal lineage known as 'Asgard'archaea,. Despite the eukaryote-like …
emerged from an archaeal lineage known as 'Asgard'archaea,. Despite the eukaryote-like …
Expanded diversity of Asgard archaea and their relationships with eukaryotes
Asgard is a recently discovered superphylum of archaea that appears to include the closest
archaeal relatives of eukaryotes,,,–. Debate continues as to whether the archaeal ancestor …
archaeal relatives of eukaryotes,,,–. Debate continues as to whether the archaeal ancestor …
Diversity, ecology and evolution of Archaea
Compared to bacteria, our knowledge of archaeal biology is limited. Historically,
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
microbiologists have mostly relied on culturing and single-gene diversity surveys to …
The MEROPS database of proteolytic enzymes, their substrates and inhibitors in 2017 and a comparison with peptidases in the PANTHER database
Abstract The MEROPS database (http://www. ebi. ac. uk/merops/) is an integrated source of
information about peptidases, their substrates and inhibitors. The hierarchical classification …
information about peptidases, their substrates and inhibitors. The hierarchical classification …