Transcription regulation by long non-coding RNAs: mechanisms and disease relevance
J Ferrer, N Dimitrova - Nature Reviews Molecular Cell Biology, 2024 - nature.com
Long non-coding RNAs (lncRNAs) outnumber protein-coding transcripts, but their functions
remain largely unknown. In this Review, we discuss the emerging roles of lncRNAs in the …
remain largely unknown. In this Review, we discuss the emerging roles of lncRNAs in the …
Long noncoding RNA functionality in imprinted domain regulation
WA MacDonald, MRW Mann - PLoS genetics, 2020 - journals.plos.org
Genomic imprinting is a parent-of-origin dependent phenomenon that restricts transcription
to predominantly one parental allele. Since the discovery of the first long noncoding RNA …
to predominantly one parental allele. Since the discovery of the first long noncoding RNA …
Dissecting the causal mechanism of X-linked dystonia-parkinsonism by integrating genome and transcriptome assembly
Summary X-linked Dystonia-Parkinsonism (XDP) is a Mendelian neurodegenerative
disease that is endemic to the Philippines and is associated with a founder haplotype. We …
disease that is endemic to the Philippines and is associated with a founder haplotype. We …
Anti-CRISPR-associated proteins are crucial repressors of anti-CRISPR transcription
Phages express anti-CRISPR (Acr) proteins to inhibit CRISPR-Cas systems that would
otherwise destroy their genomes. Most acr genes are located adjacent to anti-CRISPR …
otherwise destroy their genomes. Most acr genes are located adjacent to anti-CRISPR …
Disease onset in X-linked dystonia-parkinsonism correlates with expansion of a hexameric repeat within an SVA retrotransposon in TAF1
DC Bragg, K Mangkalaphiban… - Proceedings of the …, 2017 - National Acad Sciences
X-linked dystonia-parkinsonism (XDP) is a neurodegenerative disease associated with an
antisense insertion of a SINE-VNTR-Alu (SVA)-type retrotransposon within an intron of …
antisense insertion of a SINE-VNTR-Alu (SVA)-type retrotransposon within an intron of …
Programming Escherichia coli to function as a digital display
J Shin, S Zhang, BS Der, AAK Nielsen… - Molecular systems …, 2020 - embopress.org
Synthetic genetic circuits offer the potential to wield computational control over biology, but
their complexity is limited by the accuracy of mathematical models. Here, we present …
their complexity is limited by the accuracy of mathematical models. Here, we present …
Transcriptional interference at tandem lncRNA and protein-coding genes: an emerging theme in regulation of cellular nutrient homeostasis
S Shuman - Nucleic acids research, 2020 - academic.oup.com
Tandem transcription interference occurs when the act of transcription from an upstream
promoter suppresses utilization of a co-oriented downstream promoter. Because eukaryal …
promoter suppresses utilization of a co-oriented downstream promoter. Because eukaryal …
Enhancer LncRNAs influence chromatin interactions in different ways
More than 98% of the human genome does not encode proteins, and the vast majority of the
noncoding regions have not been well studied. Some of these regions contain enhancers …
noncoding regions have not been well studied. Some of these regions contain enhancers …
Quantitative modelling predicts the impact of DNA methylation on RNA polymerase II traffic
J Cholewa-Waclaw, R Shah, S Webb… - Proceedings of the …, 2019 - National Acad Sciences
Patterns of gene expression are primarily determined by proteins that locally enhance or
repress transcription. While many transcription factors target a restricted number of genes …
repress transcription. While many transcription factors target a restricted number of genes …
[HTML][HTML] The tumor therapeutic potential of long non-coding RNA delivery and targeting
S Han, X Chen, L Huang - Acta Pharmaceutica Sinica B, 2023 - Elsevier
Long non-coding RNAs (lncRNAs) is a type of RNA over 200 nt long without any protein
coding ability, which has been investigated relating to crucial biological function in cells …
coding ability, which has been investigated relating to crucial biological function in cells …