Bioengineering approaches for the advanced organoid research

SA Yi, Y Zhang, C Rathnam, T Pongkulapa… - Advanced …, 2021 - Wiley Online Library
Recent advances in 3D cell culture technology have enabled scientists to generate stem cell
derived organoids that recapitulate the structural and functional characteristics of native …

Retinal organoids: a window into human retinal development

M O'Hara-Wright, A Gonzalez-Cordero - Development, 2020 - journals.biologists.com
Retinal development and maturation are orchestrated by a series of interacting signalling
networks that drive the morphogenetic transformation of the anterior developing brain …

Transfer learning enables predictions in network biology

CV Theodoris, L Xiao, A Chopra, MD Chaffin… - Nature, 2023 - nature.com
Mapping gene networks requires large amounts of transcriptomic data to learn the
connections between genes, which impedes discoveries in settings with limited data …

[HTML][HTML] Cell types of the human retina and its organoids at single-cell resolution

CS Cowan, M Renner, M De Gennaro, B Gross-Scherf… - Cell, 2020 - cell.com
Human organoids recapitulating the cell-type diversity and function of their target organ are
valuable for basic and translational research. We developed light-sensitive human retinal …

[HTML][HTML] Human brain organoids assemble functionally integrated bilateral optic vesicles

E Gabriel, W Albanna, G Pasquini, A Ramani… - Cell stem cell, 2021 - cell.com
During embryogenesis, optic vesicles develop from the diencephalon via a multistep
process of organogenesis. Using induced pluripotent stem cell (iPSC)-derived human brain …

Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development

Y Lu, F Shiau, W Yi, S Lu, Q Wu, JD Pearson… - Developmental cell, 2020 - cell.com
The development of single-cell RNA sequencing (scRNA-seq) has allowed high-resolution
analysis of cell-type diversity and transcriptional networks controlling cell-fate specification …

Cell atlas of the human fovea and peripheral retina

W Yan, YR Peng, T van Zyl, A Regev, K Shekhar… - Scientific reports, 2020 - nature.com
Most irreversible blindness results from retinal disease. To advance our understanding of
the etiology of blinding diseases, we used single-cell RNA-sequencing (scRNA-seq) to …

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets

Á Vértesy, OL Eichmüller, J Naas… - The EMBO …, 2022 - embopress.org
Organoids enable in vitro modeling of complex developmental processes and disease
pathologies. Like most 3D cultures, organoids lack sufficient oxygen supply and therefore …

[HTML][HTML] Single-cell ATAC-seq of fetal human retina and stem-cell-derived retinal organoids shows changing chromatin landscapes during cell fate acquisition

C Finkbeiner, I Ortuño-Lizarán, A Sridhar, M Hooper… - Cell reports, 2022 - cell.com
We previously used single-cell transcriptomic analysis to characterize human fetal retinal
development and assessed the degree to which retinal organoids recapitulate normal …

[HTML][HTML] Extension of retinofugal projections in an assembled model of human pluripotent stem cell-derived organoids

CM Fligor, SS Lavekar, J Harkin, PK Shields… - Stem Cell Reports, 2021 - cell.com
The development of the visual system involves the coordination of spatial and temporal
events to specify the organization of varied cell types, including the elongation of axons from …