Molecular genetic variation of animals and plants under domestication

L Andersson, M Purugganan - Proceedings of the National …, 2022 - National Acad Sciences
Domesticated plants and animals played crucial roles as models for evolutionary change by
means of natural selection and for establishing the rules of inheritance, originally proposed …

Origins, evolution, and phenotypic impact of new genes

H Kaessmann - Genome research, 2010 - genome.cshlp.org
Ever since the pre-molecular era, the birth of new genes with novel functions has been
considered to be a major contributor to adaptive evolutionary innovation. Here, I review the …

[HTML][HTML] Waves of retrotransposon expansion remodel genome organization and CTCF binding in multiple mammalian lineages

D Schmidt, PC Schwalie, MD Wilson, B Ballester… - Cell, 2012 - cell.com
CTCF-binding locations represent regulatory sequences that are highly constrained over the
course of evolution. To gain insight into how these DNA elements are conserved and spread …

Quantitative, high-resolution proteomics for data-driven systems biology

J Cox, M Mann - Annual review of biochemistry, 2011 - annualreviews.org
Systems biology requires comprehensive data at all molecular levels. Mass spectrometry
(MS)-based proteomics has emerged as a powerful and universal method for the global …

Genomic imprinting and parent-of-origin effects on complex traits

HA Lawson, JM Cheverud, JB Wolf - Nature Reviews Genetics, 2013 - nature.com
Parent-of-origin effects occur when the phenotypic effect of an allele depends on whether it
is inherited from the mother or the father. Several phenomena can cause parent-of-origin …

Genome-wide association analysis in East Asians identifies breast cancer susceptibility loci at 1q32. 1, 5q14. 3 and 15q26. 1

Q Cai, B Zhang, H Sung, SK Low, SS Kweon, W Lu… - Nature …, 2014 - nature.com
In a three-stage genome-wide association study among East Asian women including 22,780
cases and 24,181 controls, we identified 3 genetic loci newly associated with breast cancer …

Transposable elements are the primary source of novelty in primate gene regulation

M Trizzino, YS Park, M Holsbach-Beltrame… - Genome …, 2017 - genome.cshlp.org
Gene regulation shapes the evolution of phenotypic diversity. We investigated the evolution
of liver promoters and enhancers in six primate species using ChIP-seq (H3K27ac and …

Paternally expressed genes predominate in the placenta

X Wang, DC Miller, R Harman… - Proceedings of the …, 2013 - National Acad Sciences
The discovery of genomic imprinting through studies of manipulated mouse embryos
indicated that the paternal genome has a major influence on placental development …

Transposable elements generate regulatory novelty in a tissue-specific fashion

M Trizzino, A Kapusta, CD Brown - BMC genomics, 2018 - Springer
Background Transposable elements (TE) are an important source of evolutionary novelty in
gene regulation. However, the mechanisms by which TEs contribute to gene expression are …

Editing porcine IGF2 regulatory element improved meat production in Chinese Bama pigs

G Xiang, J Ren, T Hai, R Fu, D Yu, J Wang, W Li… - Cellular and Molecular …, 2018 - Springer
Insulin-like growth factor 2 (IGF2) is an important growth factor, which promotes growth and
development in mammals during fetal and postnatal stages. Using CRISPR–Cas9 system …