Diversity within species: interpreting strains in microbiomes

T Van Rossum, P Ferretti, OM Maistrenko… - Nature Reviews …, 2020 - nature.com
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …

Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses

M Mendoza-Suárez, SU Andersen, PS Poole… - Frontiers in plant …, 2021 - frontiersin.org
Biological nitrogen fixation by Rhizobium-legume symbioses represents an environmentally
friendly and inexpensive alternative to the use of chemical nitrogen fertilizers in legume …

Metagenomics: application of genomics to uncultured microorganisms

J Handelsman - Microbiology and molecular biology reviews, 2004 - Am Soc Microbiol
Metagenomics (also referred to as environmental and community genomics) is the genomic
analysis of microorganisms by direct extraction and cloning of DNA from an assemblage of …

Symbiosis within symbiosis: evolving nitrogen-fixing legume symbionts

P Remigi, J Zhu, JPW Young, C Masson-Boivin - Trends in microbiology, 2016 - cell.com
Bacterial accessory genes are genomic symbionts with an evolutionary history and future
that is different from that of their hosts. Packages of accessory genes move from strain to …

Rhizosphere bacterial signalling: a love parade beneath our feet

E Somers, J Vanderleyden… - Critical reviews in …, 2004 - Taylor & Francis
Plant roots support the growth and activities of a wide variety of microorganisms that may
have a profound effect on the growth and/or health of plants. Among these microorganisms …

Tales from the underground: molecular plant–rhizobacteria interactions

F Persello‐Cartieaux, L Nussaume… - Plant, Cell & …, 2003 - Wiley Online Library
Colonization of the rhizosphere by micro‐organisms results in modifications in plant growth
and development. This review examines the mechanisms involved in growth promotion by …

Agricultural management of grain legumes: has it led to an increase in nitrogen fixation?

C Van Kessel, C Hartley - Field Crops Research, 2000 - Elsevier
Biological nitrogen (N2) fixation is an important aspect of sustainable and environmentally
friendly food production and long-term crop productivity. The amount of N2 fixed is primarily …

Microbial inoculants: silver bullet or microbial Jurassic Park?

CN Jack, RH Petipas, TE Cheeke, JL Rowland… - Trends in …, 2021 - cell.com
The appeal of using microbial inoculants to mediate plant traits and productivity in managed
ecosystems has increased over the past decade, because microbes represent an alternative …

Manipulation of rhizobia microflora for improving legume productivity and soil fertility: a critical assessment

J Brockwell, PJ Bottomley, JE Thies - … of Biological Nitrogen Fixation for the …, 1995 - Springer
Inputs of biologically fixed nitrogen derived from the symbiotic relationship between legumes
and their root-nodule bacteria into terrestrial ecosystems amount to at least 70 million metric …

Nodulating strains of Rhizobium loti arise through chromosomal symbiotic gene transfer in the environment.

JT Sullivan, HN Patrick, WL Lowther… - Proceedings of the …, 1995 - National Acad Sciences
Rhizobia were isolated from nodules off a stand of Lotus corniculatus established with a
single inoculant strain, ICMP3153, 7 years earlier in an area devoid of naturalized …