Cross-linking mass spectrometry for investigating protein conformations and protein–protein interactions─ a method for all seasons

L Piersimoni, PL Kastritis, C Arlt, A Sinz - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) has become one of the key technologies of structural biology. In this
review, the contributions of chemical cross-linking combined with mass spectrometry (XL …

Quantitative mass spectrometry-based proteomics: an overview

S Rozanova, K Barkovits, M Nikolov, C Schmidt… - Quantitative methods in …, 2021 - Springer
In recent decades, mass spectrometry has moved more than ever before into the front line of
protein-centered research. After being established at the qualitative level, the more …

Skyline for small molecules: a unifying software package for quantitative metabolomics

KJ Adams, B Pratt, N Bose, LG Dubois… - Journal of proteome …, 2020 - ACS Publications
Vendor-independent software tools for quantification of small molecules and metabolites are
lacking, especially for targeted analysis workflows. Skyline is a freely available, open-source …

[HTML][HTML] Cross-linking mass spectrometry (XL-MS): An emerging technology for interactomics and structural biology

C Yu, L Huang - Analytical chemistry, 2018 - ncbi.nlm.nih.gov
Protein-protein interactions are fundamental to the formation of intricate interaction networks
and the assembly of multisubunit protein complexes that represent the functional …

Mitochondrial protein interactome elucidated by chemical cross-linking mass spectrometry

DK Schweppe, JD Chavez, CF Lee… - Proceedings of the …, 2017 - National Acad Sciences
Mitochondrial protein interactions and complexes facilitate mitochondrial function. These
complexes range from simple dimers to the respirasome supercomplex consisting of …

Integration of mass spectrometry data for structural biology

HM Britt, T Cragnolini, K Thalassinos - Chemical Reviews, 2021 - ACS Publications
Mass spectrometry (MS) is increasingly being used to probe the structure and dynamics of
proteins and the complexes they form with other macromolecules. There are now several …

Chemical cross-linking with mass spectrometry: a tool for systems structural biology

JD Chavez, JE Bruce - Current opinion in chemical biology, 2019 - Elsevier
Highlights•Cross-linking-mass spectrometry constitutes a chemical method to produce
protein complex structural model constraints.•A wide range of sample types are applicable …

Protein lipoylation: an evolutionarily conserved metabolic regulator of health and disease

EA Rowland, CK Snowden, IM Cristea - Current opinion in chemical …, 2018 - Elsevier
Highlights•Lipoylation is a rare, but highly conserved lysine posttranslational modification.•
Lipoylated metabolic complexes are evolutionarily conserved from bacteria to humans.• …

Chemical crosslinking mass spectrometry analysis of protein conformations and supercomplexes in heart tissue

JD Chavez, CF Lee, A Caudal, A Keller, R Tian… - Cell systems, 2018 - cell.com
While modern structural biology technologies have greatly expanded the size and type of
protein complexes that can now be studied, the ability to derive large-scale structural …

Proteomics in non-model organisms: a new analytical frontier

M Heck, BA Neely - Journal of proteome research, 2020 - ACS Publications
For the last century we have relied on model organisms to help understand fundamental
biological processes. Now, with advancements in genome sequencing, assembly, and …