Artificial intelligence to deep learning: machine intelligence approach for drug discovery

R Gupta, D Srivastava, M Sahu, S Tiwari, RK Ambasta… - Molecular …, 2021 - Springer
Drug designing and development is an important area of research for pharmaceutical
companies and chemical scientists. However, low efficacy, off-target delivery, time …

Machine learning for synergistic network pharmacology: a comprehensive overview

F Noor, M Asif, UA Ashfaq, M Qasim… - Briefings in …, 2023 - academic.oup.com
Network pharmacology is an emerging area of systematic drug research that attempts to
understand drug actions and interactions with multiple targets. Network pharmacology has …

[HTML][HTML] Discovery and resupply of pharmacologically active plant-derived natural products: A review

AG Atanasov, B Waltenberger… - Biotechnology …, 2015 - Elsevier
Medicinal plants have historically proven their value as a source of molecules with
therapeutic potential, and nowadays still represent an important pool for the identification of …

Counting on natural products for drug design

T Rodrigues, D Reker, P Schneider, G Schneider - Nature chemistry, 2016 - nature.com
Natural products and their molecular frameworks have a long tradition as valuable starting
points for medicinal chemistry and drug discovery. Recently, there has been a revitalization …

Using PyMOL as a platform for computational drug design

S Yuan, HCS Chan, Z Hu - Wiley Interdisciplinary Reviews …, 2017 - Wiley Online Library
PyMOL, a cross‐platform molecular graphics tool, has been widely used for three‐
dimensional (3D) visualization of proteins, nucleic acids, small molecules, electron …

Protein–ligand docking in the machine-learning era

C Yang, EA Chen, Y Zhang - Molecules, 2022 - mdpi.com
Molecular docking plays a significant role in early-stage drug discovery, from structure-
based virtual screening (VS) to hit-to-lead optimization, and its capability and predictive …

Advancements in docking and molecular dynamics simulations towards ligand-receptor interactions and structure-function relationships

AAT Naqvi, T Mohammad, GM Hasan… - Current topics in …, 2018 - ingentaconnect.com
Protein-ligand interaction is an imperative subject in structure-based drug design and
protein function prediction process. Molecular docking is a computational method which …

Virtual screening: an endless staircase?

G Schneider - Nature Reviews Drug Discovery, 2010 - nature.com
Computational chemistry—in particular, virtual screening—can provide valuable
contributions in hit-and lead-compound discovery. Numerous software tools have been …

On various metrics used for validation of predictive QSAR models with applications in virtual screening and focused library design

K Roy, I Mitra - Combinatorial chemistry & high throughput …, 2011 - ingentaconnect.com
Quantitative structure-activity relationships (QSARs) have important applications in drug
discovery research, environmental fate modeling, property prediction, etc. Validation has …

PASS-assisted exploration of new therapeutic potential of natural products

RK Goel, D Singh, A Lagunin, V Poroikov - Medicinal Chemistry Research, 2011 - Springer
The use of drug substances derived from plants, fungi, bacteria, and marine organisms are
“Mother Nature Gift” for diseases of mankind. Many of these are discovered serendipitously …