A region of suppressed recombination misleads neoavian phylogenomics

S Mirarab, I Rivas-González, S Feng… - Proceedings of the …, 2024 - National Acad Sciences
Genomes are typically mosaics of regions with different evolutionary histories. When
speciation events are closely spaced in time, recombination makes the regions sharing the …

[HTML][HTML] Adaptive expansion of ERVK solo-LTRs is associated with Passeriformes speciation events

G Chen, D Yu, Y Yang, X Li, X Wang, D Sun… - Nature …, 2024 - nature.com
Endogenous retroviruses (ERVs) are ancient retroviral remnants integrated in host
genomes, and commonly deleted through unequal homologous recombination, leaving …

Phylogenomic analysis and molecular identification of true fruit flies

R He, S Wang, Q Li, Z Wang, Y Mei, F Li - Frontiers in Genetics, 2024 - frontiersin.org
The family Tephritidae in the order Diptera, known as true fruit flies, are agriculturally
important insect pests. However, the phylogenetic relationships of true fruit flies, remain …

Paleoneurology of stem palaeognaths clarifies the plesiomorphic condition of the crown bird central nervous system

KE Widrig, G Navalón, DJ Field - Journal of Morphology, 2024 - Wiley Online Library
Lithornithidae, an assemblage of volant Palaeogene fossil birds, provide our clearest
insights into the early evolutionary history of Palaeognathae, the clade that today includes …

Total-evidence dating and the phylogenetic affinities of early fossil passerines

TM Lowi-Merri, M Gjevori, ZM Bochenski… - Journal of Systematic …, 2024 - Taylor & Francis
Passeriformes is the most diverse and globally widespread order of living birds. However,
little work has been done on the phylogenetic relationships within their fossil record. Recent …

[HTML][HTML] The Chromosome-Scale Genome of Chitala ornata Illuminates the Evolution of Early Teleosts

Z Yuan, Y Song, S Zhang, Y Chen, M Xu, G Fan, X Liu - Biology, 2024 - mdpi.com
Simple Summary As the most diverse vertebrate group, the unique adaptive expansion of
euryhaline fishes is critical to understanding vertebrate evolution. In particular, the high …

Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES

A Gupta, S Mirarab, Y Turakhia - bioRxiv, 2024 - biorxiv.org
Inference of species trees plays a crucial role in advancing our understanding of
evolutionary relationships and has immense significance for diverse biological and medical …

Evolutionary new centromeres in the snowy owl genome putatively seeded from a transposable element

HT Baalsrud, B Garmann-Aarhus, ELG Enevoldsen… - bioRxiv, 2024 - biorxiv.org
Comparative genomic studies in birds have revealed that bird genomes are relatively repeat-
poor and stable in terms of karyotype, size, and gene synteny/collinearity compared to other …

A complete and dynamic tree of birds

EJ McTavish, JA Gerbracht, MT Holder, MJ Iliff… - bioRxiv, 2024 - biorxiv.org
We present a complete, time-scaled, evolutionary tree of the world's bird species. This tree
unites phylogenetic estimates for 9,239 species from 262 studies published between 1990 …

[PDF][PDF] A region of suppressed recombination misleads neoavian phylogenomics

B Pateng, ED Jarvish, G Zhangc, EL Braunm - 2024 - pdfs.semanticscholar.org
Genomes are typically mosaics of regions with different evolutionary histories. When
speciation events are closely spaced in time, recombination makes the regions sharing the …