The Baltimore classification of viruses 50 years later: how does it stand in the light of virus evolution?

EV Koonin, M Krupovic, VI Agol - Microbiology and Molecular …, 2021 - Am Soc Microbiol
SUMMARY Fifty years ago, David Baltimore published a brief conceptual paper delineating
the classification of viruses by the routes of genome expression. The six “Baltimore classes” …

Viruses defined by the position of the virosphere within the replicator space

EV Koonin, VV Dolja, M Krupovic… - … and Molecular Biology …, 2021 - Am Soc Microbiol
Originally, viruses were defined as miniscule infectious agents that passed through filters
that retain even the smallest cells. Subsequently, viruses were considered obligate …

Biological foundations of successful bacteriophage therapy

C Venturini, A Petrovic Fabijan… - EMBO Molecular …, 2022 - embopress.org
Bacteriophages (phages) are selective viral predators of bacteria. Abundant and ubiquitous
in nature, phages can be used to treat bacterial infections (phage therapy), including …

[HTML][HTML] Prophages encode phage-defense systems with cognate self-immunity

SV Owen, N Wenner, CL Dulberger, EV Rodwell… - Cell host & …, 2021 - cell.com
Temperate phages are pervasive in bacterial genomes, existing as vertically inherited
islands termed prophages. Prophages are vulnerable to predation of their host bacterium by …

Prophages provide a rich source of antiphage defense systems

PH Patel, KL Maxwell - Current Opinion in Microbiology, 2023 - Elsevier
Temperate phages are pervasive in nature, existing within bacterial cells in a form known as
prophages. In this state, survival of the phage is intricately tied to the survival of the bacterial …

Isolation of a virus causing a chronic infection in the archaeal model organism Haloferax volcanii reveals antiviral activities of a provirus

T Alarcón-Schumacher, A Naor… - Proceedings of the …, 2022 - National Acad Sciences
Viruses are important ecological, biogeochemical, and evolutionary drivers in every
environment. Upon infection, they often cause the lysis of the host cell. However, some …

[HTML][HTML] Bacterial MazF/MazE toxin-antitoxin suppresses lytic propagation of arbitrium-containing phages

Y Cui, X Su, C Wang, H Xu, D Hu, J Wang, K Pei… - Cell Reports, 2022 - cell.com
Temperate phages dynamically switch between lysis and lysogeny in their full life cycle.
Some Bacillus-infecting phages utilize a quorum-sensing-like intercellular communication …

[HTML][HTML] Microbial arsenal of antiviral defenses. Part II

AB Isaev, OS Musharova, KV Severinov - Biochemistry (Moscow), 2021 - Springer
Bacteriophages or phages are viruses that infect bacterial cells (for the scope of this review
we will also consider viruses that infect Archaea). The constant threat of phage infection is a …

[HTML][HTML] Recent insights into aquatic viruses: Emerging and reemerging pathogens, molecular features, biological effects, and novel investigative approaches

QY Zhang, F Ke, L Gui, Z Zhao - Water Biology and Security, 2022 - Elsevier
Aquatic viruses are naturally present in the aquatic environment and the number of viruses
is staggering. Various multicellular organisms in aquatic ecosystems may be infected, cross …

[HTML][HTML] Recruitment of mobile genetic elements for diverse cellular functions in prokaryotes

S Benler, EV Koonin - Frontiers in Molecular Biosciences, 2022 - frontiersin.org
Prokaryotic genomes are replete with mobile genetic elements (MGE) that span a continuum
of replication autonomy. On numerous occasions during microbial evolution, diverse MGE …