A survey of evolutionary algorithms using metameric representations

M Ryerkerk, R Averill, K Deb, E Goodman - Genetic Programming and …, 2019 - Springer
Evolutionary algorithms have been used to solve a number of variable-length problems,
many of which share a common representation. A set of design variables is repeatedly …

Ca-neat: evolved compositional pattern producing networks for cellular automata morphogenesis and replication

S Nichele, MB Ose, S Risi… - IEEE Transactions on …, 2017 - ieeexplore.ieee.org
Cellular Automata (CA) are a remarkable example of morphogenetic system, where cells
grow and self-organize through local interactions. CA have been used as abstractions of …

Using evolutionary algorithms to study the evolution of gene regulatory networks controlling biological development

A Spirov, D Holloway - Evolutionary Computation in Gene …, 2016 - Wiley Online Library
This chapter outlines the general approaches being used by computational biologists to
simulate evolution, and reviews some of the major impacts this work is having on biological …

Evolutionary growth of genomes for the development and replication of multicellular organisms with indirect encoding

S Nichele, G Tufte - 2014 IEEE International Conference on …, 2014 - ieeexplore.ieee.org
The genomes of biological organisms are not fixed in size. They evolved and diverged into
different species acquiring new genes and thus having different lengths. In a way, biological …

Genotype regulation by self-modifying instruction-based development on cellular automata

S Nichele, TE Glover, G Tufte - … Problem Solving from Nature–PPSN XIV …, 2016 - Springer
A novel method for regulation of gene expression for artificial cellular systems is introduced.
It is based on an instructon-based representation which allows self-modification of genotype …

A comparison of genetic regulatory network dynamics and encoding

J Disset, DG Wilson, S Cussat-Blanc… - Proceedings of the …, 2017 - dl.acm.org
Genetic Regulatory Networks (GRNs) implementations have a high degree of variability in
their details. Parameters, encoding methods, and dynamics formulas all differ in the …

Metameric representations in evolutionary algorithms

ML Ryerkerk - 2018 - search.proquest.com
Optimization problems traditionally involve fixed-length representations to specify a
description of a solution. Every solution defines the same number of design variables …

The influence of cellular characteristics on the evolution of shape homeostasis

P Gerlee, D Basanta, ARA Anderson - Artificial life, 2017 - direct.mit.edu
The importance of individual cells in a developing multicellular organism is well known, but
precisely how the individual cellular characteristics of those cells collectively drive the …

The impact of cellular characteristics on the evolution of shape homeostasis

P Gerlee, D Basanta, ARA Anderson - arXiv preprint arXiv:1512.02474, 2015 - arxiv.org
The importance of individual cells in a developing multicellular organism is well known but
precisely how the individual cellular characteristics of those cells collectively drive the …

Medical Applications of Evolvable Hardware

MA Trefzer, AM Tyrrell, MA Lones, SL Smith - Evolvable Hardware: From …, 2015 - Springer
Medicine is an important and challenging area for machine learning and computational
intelligence approaches. Evolutionary algorithms, in particular, offer a number of advantages …