[HTML][HTML] Applications of single-cell sequencing in cancer research: progress and perspectives

Y Lei, R Tang, J Xu, W Wang, B Zhang, J Liu… - Journal of hematology & …, 2021 - Springer
Single-cell sequencing, including genomics, transcriptomics, epigenomics, proteomics and
metabolomics sequencing, is a powerful tool to decipher the cellular and molecular …

[HTML][HTML] Eleven grand challenges in single-cell data science

D Lähnemann, J Köster, E Szczurek, DJ McCarthy… - Genome biology, 2020 - Springer
The recent boom in microfluidics and combinatorial indexing strategies, combined with low
sequencing costs, has empowered single-cell sequencing technology. Thousands—or even …

Autism genes converge on asynchronous development of shared neuron classes

B Paulsen, S Velasco, AJ Kedaigle, M Pigoni… - Nature, 2022 - nature.com
Genetic risk for autism spectrum disorder (ASD) is associated with hundreds of genes
spanning a wide range of biological functions,,,,–. The alterations in the human brain …

[HTML][HTML] Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

ASE Cuomo, DD Seaton, DJ McCarthy… - Nature …, 2020 - nature.com
Recent developments in stem cell biology have enabled the study of cell fate decisions in
early human development that are impossible to study in vivo. However, understanding how …

[HTML][HTML] Single-cell transcriptomics identifies an effectorness gradient shaping the response of CD4+ T cells to cytokines

E Cano-Gamez, B Soskic, TI Roumeliotis, E So… - Nature …, 2020 - nature.com
Naïve CD4+ T cells coordinate the immune response by acquiring an effector phenotype in
response to cytokines. However, the cytokine responses in memory T cells remain largely …

Computational methods for single-cell omics across modalities

M Efremova, SA Teichmann - Nature methods, 2020 - nature.com
Single-cell omics approaches provide high-resolution data on cellular phenotypes,
developmental dynamics and communication networks in diverse tissues and conditions …

[HTML][HTML] Vireo: Bayesian demultiplexing of pooled single-cell RNA-seq data without genotype reference

Y Huang, DJ McCarthy, O Stegle - Genome biology, 2019 - Springer
Multiplexed single-cell RNA-seq analysis of multiple samples using pooling is a promising
experimental design, offering increased throughput while allowing to overcome batch …

[HTML][HTML] Single-cell transcriptomics: current methods and challenges in data acquisition and analysis

A Adil, V Kumar, AT Jan, M Asger - Frontiers in Neuroscience, 2021 - frontiersin.org
Rapid cost drops and advancements in next-generation sequencing have made profiling of
cells at individual level a conventional practice in scientific laboratories worldwide. Single …

Applications of single-cell DNA sequencing

GD Evrony, AG Hinch, C Luo - Annual review of genomics and …, 2021 - annualreviews.org
Over the past decade, genomic analyses of single cells—the fundamental units of life—have
become possible. Single-cell DNA sequencing has shed light on biological questions that …

[PDF][PDF] Clonally resolved single-cell multi-omics identifies routes of cellular differentiation in acute myeloid leukemia

S Beneyto-Calabuig, AK Merbach, JA Kniffka, M Antes… - Cell Stem Cell, 2023 - cell.com
Inter-patient variability and the similarity of healthy and leukemic stem cells (LSCs) have
impeded the characterization of LSCs in acute myeloid leukemia (AML) and their …