Recent Developments of the Synthetic Biology Toolkit for Clostridium
The Clostridium genus is a large, diverse group consisting of Gram-positive, spore-forming,
obligate anaerobic firmicutes. Among this group are historically notorious pathogens as well …
obligate anaerobic firmicutes. Among this group are historically notorious pathogens as well …
Sugar-phosphate toxicities
EF Boulanger, A Sabag-Daigle… - Microbiology and …, 2021 - Am Soc Microbiol
Accumulation of phosphorylated intermediates during cellular metabolism can have wide-
ranging toxic effects on many organisms, including humans and the pathogens that infect …
ranging toxic effects on many organisms, including humans and the pathogens that infect …
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
K Papenfort, Y Sun, M Miyakoshi, CK Vanderpool… - Cell, 2013 - cell.com
Glucose homeostasis is strictly controlled in all domains of life. Bacteria that are unable to
balance intracellular sugar levels and deal with potentially toxic phosphosugars cease …
balance intracellular sugar levels and deal with potentially toxic phosphosugars cease …
Effects of hypoxia and reoxygenation on intermediary metabolite homeostasis of marine bivalves Mytilus edulis and Crassostrea gigas
F Haider, HI Falfushynska, S Timm… - … and Physiology Part A …, 2020 - Elsevier
Marine benthic invertebrates are frequently exposed to fluctuating oxygen levels resulting in
hypoxia-reoxygenation (H/R) stress in the intertidal, estuarine and shallow coastal habitats …
hypoxia-reoxygenation (H/R) stress in the intertidal, estuarine and shallow coastal habitats …
Gene dispensability in Escherichia coli grown in thirty different carbon environments
Central metabolism is a topic that has been studied for decades, and yet, this process is still
not fully understood in Escherichia coli, perhaps the most amenable and well-studied model …
not fully understood in Escherichia coli, perhaps the most amenable and well-studied model …
Urinary metabolic profiling identifies a key role for glycocholic acid in human liver cancer by ultra-performance liquid-chromatography coupled with high-definition …
A Zhang, H Sun, G Yan, Y Han, Y Ye, X Wang - Clinica Chimica Acta, 2013 - Elsevier
BACKGROUND: Metabolomics has been proposed to be a hallmark of cancer, yet a
systematic characterization of a metabolite and metabolic pathways in human …
systematic characterization of a metabolite and metabolic pathways in human …
Translational regulation by bacterial small RNAs via an unusual Hfq-dependent mechanism
MS Azam, CK Vanderpool - Nucleic acids research, 2018 - academic.oup.com
In bacteria, the canonical mechanism of translational repression by small RNAs (sRNAs)
involves sRNA-mRNA base pairing that occludes the ribosome binding site (RBS), directly …
involves sRNA-mRNA base pairing that occludes the ribosome binding site (RBS), directly …
Molecular call and response: the physiology of bacterial small RNAs
GR Richards, CK Vanderpool - Biochimica et Biophysica Acta (BBA)-Gene …, 2011 - Elsevier
The vital role of bacterial small RNAs (sRNAs) in cellular regulation is now well-established.
Although many diverse mechanisms by which sRNAs bring about changes in gene …
Although many diverse mechanisms by which sRNAs bring about changes in gene …
The small RNA SgrS: roles in metabolism and pathogenesis of enteric bacteria
M Bobrovskyy, CK Vanderpool - Frontiers in cellular and infection …, 2014 - frontiersin.org
Bacteria adapt to ever-changing habitats through specific responses to internal and external
stimuli that result in changes in gene regulation and metabolism. One internal metabolic cue …
stimuli that result in changes in gene regulation and metabolism. One internal metabolic cue …
Depletion of glycolytic intermediates plays a key role in glucose-phosphate stress in Escherichia coli
GR Richards, MV Patel, CR Lloyd… - Journal of …, 2013 - Am Soc Microbiol
In bacteria like Escherichia coli, the accumulation of glucose-6-phosphate (G6P) or its
analogs such as α-methyl glucoside-6-phosphate (αMG6P) results in stress that appears in …
analogs such as α-methyl glucoside-6-phosphate (αMG6P) results in stress that appears in …