Organizational principles of 3D genome architecture
Studies of 3D chromatin organization have suggested that chromosomes are hierarchically
organized into large compartments composed of smaller domains called topologically …
organized into large compartments composed of smaller domains called topologically …
The relationship between genome structure and function
AM Oudelaar, DR Higgs - Nature Reviews Genetics, 2021 - nature.com
Precise patterns of gene expression in metazoans are controlled by three classes of
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
regulatory elements: promoters, enhancers and boundary elements. During differentiation …
Mitochondrial base editor induces substantial nuclear off-target mutations
DddA-derived cytosine base editors (DdCBEs)—which are fusions of split DddA halves and
transcription activator-like effector (TALE) array proteins from bacteria—enable targeted C• …
transcription activator-like effector (TALE) array proteins from bacteria—enable targeted C• …
Eukaryotic core promoters and the functional basis of transcription initiation
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …
transcription start sites of protein-coding and non-coding genes that support the assembly of …
Predicting 3D genome folding from DNA sequence with Akita
In interphase, the human genome sequence folds in three dimensions into a rich variety of
locus-specific contact patterns. Cohesin and CTCF (CCCTC-binding factor) are key …
locus-specific contact patterns. Cohesin and CTCF (CCCTC-binding factor) are key …
[HTML][HTML] YY1 is a structural regulator of enhancer-promoter loops
There is considerable evidence that chromosome structure plays important roles in gene
control, but we have limited understanding of the proteins that contribute to structural …
control, but we have limited understanding of the proteins that contribute to structural …
Cohesin loss eliminates all loop domains
SSP Rao, SC Huang, BG St Hilaire, JM Engreitz… - Cell, 2017 - cell.com
The human genome folds to create thousands of intervals, called" contact domains," that
exhibit enhanced contact frequency within themselves." Loop domains" form because of …
exhibit enhanced contact frequency within themselves." Loop domains" form because of …
The structural basis for cohesin–CTCF-anchored loops
Y Li, JHI Haarhuis, Á Sedeño Cacciatore… - Nature, 2020 - nature.com
Cohesin catalyses the folding of the genome into loops that are anchored by CTCF. The
molecular mechanism of how cohesin and CTCF structure the 3D genome has remained …
molecular mechanism of how cohesin and CTCF structure the 3D genome has remained …
Targeted degradation of CTCF decouples local insulation of chromosome domains from genomic compartmentalization
The molecular mechanisms underlying folding of mammalian chromosomes remain poorly
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
understood. The transcription factor CTCF is a candidate regulator of chromosomal …
Lamina-associated domains: links with chromosome architecture, heterochromatin, and gene repression
B Van Steensel, AS Belmont - Cell, 2017 - cell.com
In metazoan cell nuclei, hundreds of large chromatin domains are in close contact with the
nuclear lamina. Such lamina-associated domains (LADs) are thought to help organize …
nuclear lamina. Such lamina-associated domains (LADs) are thought to help organize …