[HTML][HTML] Emergent CRISPR–Cas-based technologies for engineering non-model bacteria
Highlights•CRISPR–Cas systems promoted the engineering of non-model bacteria.•Tools
include genome modifications and finely-tuned transcriptional regulation.•CRISPR–Cas …
include genome modifications and finely-tuned transcriptional regulation.•CRISPR–Cas …
Synergistic investigation of natural and synthetic C1-trophic microorganisms to foster a circular carbon economy
A true circular carbon economy must upgrade waste greenhouse gases. C1-based
biomanufacturing is an attractive solution, in which one carbon (C1) molecules (eg CO2 …
biomanufacturing is an attractive solution, in which one carbon (C1) molecules (eg CO2 …
Systems and synthetic biology-driven engineering of live bacterial therapeutics
The past decade has seen growing interest in bacterial engineering for therapeutically
relevant applications. While early efforts focused on repurposing genetically tractable model …
relevant applications. While early efforts focused on repurposing genetically tractable model …
CRISPR Tools in Bacterial Whole-Cell Biocatalysis
AP Mulet, M Ripoll, L Betancor - ACS Sustainable Chemistry & …, 2023 - ACS Publications
Biocatalysis has emerged as a promising alternative to conventional chemical processes for
the production of a wide range of chemicals, providing a sustainable solution to the problem …
the production of a wide range of chemicals, providing a sustainable solution to the problem …
Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering
PA Sanford, BM Woolston - ACS Synthetic Biology, 2024 - ACS Publications
Eubacterium limosum is a Clostridial acetogen that efficiently utilizes a wide range of single-
carbon substrates and contributes to metabolism of health-associated compounds in the …
carbon substrates and contributes to metabolism of health-associated compounds in the …
Refining and illuminating acetogenic Eubacterium strains for reclassification and metabolic engineering
Abstract Background The genus Eubacterium is quite diverse and includes several
acetogenic strains capable of fermenting C1-substrates into valuable products. Especially …
acetogenic strains capable of fermenting C1-substrates into valuable products. Especially …
Genome-wide characterization of diverse bacteriophages enabled by RNA-binding CRISPRi
BA Adler, MJ Al-Shimary, JR Patel, E Armbruster… - bioRxiv, 2023 - biorxiv.org
Bacteriophages constitute one of the largest sources of unknown gene content in the
biosphere. Even for well-studied model phages, robust experimental approaches to identify …
biosphere. Even for well-studied model phages, robust experimental approaches to identify …
CRISPR Tools for Engineering Prokaryotic Systems: Recent Advances and New Applications
In the past decades, the broad selection of CRISPR-Cas systems has revolutionized
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …
[HTML][HTML] Genome-based reclassification of strain KIST612, previously classified as Eubacterium limosum, into a new strain of Eubacterium callanderi
The strain KIST612, initially identified as E. limosum, was a suspected member of E.
callanderi due to differences in phenotype, genotype, and average nucleotide identity (ANI) …
callanderi due to differences in phenotype, genotype, and average nucleotide identity (ANI) …
The rise and future of CRISPR-based approaches for high-throughput genomics
S Vercauteren, S Fiesack, L Maroc… - FEMS microbiology …, 2024 - academic.oup.com
Clustered regularly interspaced short palindromic repeats (CRISPR) has revolutionized the
field of genome editing. To circumvent the permanent modifications made by traditional …
field of genome editing. To circumvent the permanent modifications made by traditional …