[HTML][HTML] Emergent CRISPR–Cas-based technologies for engineering non-model bacteria

DC Volke, E Orsi, PI Nikel - Current Opinion in Microbiology, 2023 - Elsevier
Highlights•CRISPR–Cas systems promoted the engineering of non-model bacteria.•Tools
include genome modifications and finely-tuned transcriptional regulation.•CRISPR–Cas …

Synergistic investigation of natural and synthetic C1-trophic microorganisms to foster a circular carbon economy

E Orsi, PI Nikel, LK Nielsen, S Donati - Nature Communications, 2023 - nature.com
A true circular carbon economy must upgrade waste greenhouse gases. C1-based
biomanufacturing is an attractive solution, in which one carbon (C1) molecules (eg CO2 …

Systems and synthetic biology-driven engineering of live bacterial therapeutics

K Kim, M Kang, BK Cho - Frontiers in Bioengineering and …, 2023 - frontiersin.org
The past decade has seen growing interest in bacterial engineering for therapeutically
relevant applications. While early efforts focused on repurposing genetically tractable model …

CRISPR Tools in Bacterial Whole-Cell Biocatalysis

AP Mulet, M Ripoll, L Betancor - ACS Sustainable Chemistry & …, 2023 - ACS Publications
Biocatalysis has emerged as a promising alternative to conventional chemical processes for
the production of a wide range of chemicals, providing a sustainable solution to the problem …

Development of a Recombineering System for the Acetogen Eubacterium limosum with Cas9 Counterselection for Markerless Genome Engineering

PA Sanford, BM Woolston - ACS Synthetic Biology, 2024 - ACS Publications
Eubacterium limosum is a Clostridial acetogen that efficiently utilizes a wide range of single-
carbon substrates and contributes to metabolism of health-associated compounds in the …

Refining and illuminating acetogenic Eubacterium strains for reclassification and metabolic engineering

M Flaiz, A Poehlein, W Wilhelm, A Mook, R Daniel… - Microbial Cell …, 2024 - Springer
Abstract Background The genus Eubacterium is quite diverse and includes several
acetogenic strains capable of fermenting C1-substrates into valuable products. Especially …

Genome-wide characterization of diverse bacteriophages enabled by RNA-binding CRISPRi

BA Adler, MJ Al-Shimary, JR Patel, E Armbruster… - bioRxiv, 2023 - biorxiv.org
Bacteriophages constitute one of the largest sources of unknown gene content in the
biosphere. Even for well-studied model phages, robust experimental approaches to identify …

CRISPR Tools for Engineering Prokaryotic Systems: Recent Advances and New Applications

DA Burbano, C Kiattisewee, AV Karanjia… - Annual Review of …, 2024 - annualreviews.org
In the past decades, the broad selection of CRISPR-Cas systems has revolutionized
biotechnology by enabling multimodal genetic manipulation in diverse organisms. Rooted in …

[HTML][HTML] Genome-based reclassification of strain KIST612, previously classified as Eubacterium limosum, into a new strain of Eubacterium callanderi

JY Kim, B Kang, S Oh, Y Gil, IG Choi… - Journal of microbiology …, 2023 - ncbi.nlm.nih.gov
The strain KIST612, initially identified as E. limosum, was a suspected member of E.
callanderi due to differences in phenotype, genotype, and average nucleotide identity (ANI) …

The rise and future of CRISPR-based approaches for high-throughput genomics

S Vercauteren, S Fiesack, L Maroc… - FEMS microbiology …, 2024 - academic.oup.com
Clustered regularly interspaced short palindromic repeats (CRISPR) has revolutionized the
field of genome editing. To circumvent the permanent modifications made by traditional …