A tale of two rhythms: Locked clocks and chaos in biology

ML Heltberg, S Krishna, LP Kadanoff, MH Jensen - Cell Systems, 2021 - cell.com
The fundamental mechanisms that control and regulate biological organisms exhibit a
surprising level of complexity. Oscillators are perhaps the simplest motifs that produce time …

[HTML][HTML] Amplitude effects allow short jet lags and large seasonal phase shifts in minimal clock models

B Ananthasubramaniam, C Schmal, H Herzel - Journal of molecular biology, 2020 - Elsevier
Mathematical models of varying complexity have helped shed light on different aspects of
circadian clock function. In this work, we question whether minimal clock models (Goodwin …

Robust entrainment of circadian oscillators requires specific phase response curves

B Pfeuty, Q Thommen, M Lefranc - Biophysical journal, 2011 - cell.com
The circadian clocks keeping time in many living organisms rely on self-sustained
biochemical oscillations entrained by external cues, such as light, to the 24-h cycle induced …

Robustness of Circadian Clocks to Daylight Fluctuations: Hints from the Picoeucaryote Ostreococcus tauri

Q Thommen, B Pfeuty, PE Morant… - PLoS Computational …, 2010 - journals.plos.org
The development of systemic approaches in biology has put emphasis on identifying genetic
modules whose behavior can be modeled accurately so as to gain insight into their structure …

Robust and flexible response of the Ostreococcus tauri circadian clock to light/dark cycles of varying photoperiod

Q Thommen, B Pfeuty, F Corellou, FY Bouget… - The FEBS …, 2012 - Wiley Online Library
The green microscopic alga Ostreococcus tauri has recently emerged as a promising model
for understanding how circadian clocks, which drive the daily biological rhythms of many …

[HTML][HTML] A robust two-gene oscillator at the core of Ostreococcus tauri circadian clock

PE Morant, Q Thommen, B Pfeuty… - … Journal of Nonlinear …, 2010 - pubs.aip.org
The microscopic green alga Ostreococcus tauri is rapidly emerging as a promising model
organism in the green lineage. In particular, recent results by Corellou et al [Plant Cell 21 …

Strong feedback limit of the Goodwin circadian oscillator

A Woller, D Gonze, T Erneux - Physical Review E—Statistical, Nonlinear, and …, 2013 - APS
The three-variable Goodwin model constitutes a prototypical oscillator based on a negative
feedback loop. It was used as a minimal model for circadian oscillations. Other core models …

Entrainment of noise-induced and limit cycle oscillators under weak noise

N Mitarai, U Alon, MH Jensen - Chaos: An Interdisciplinary Journal of …, 2013 - pubs.aip.org
Theoretical models that describe oscillations in biological systems are often either a limit
cycle oscillator, where the deterministic nonlinear dynamics gives sustained periodic …

Stochastic oscillations induced by intrinsic fluctuations in a self-repressing gene

J Wang, M Lefranc, Q Thommen - Biophysical Journal, 2014 - cell.com
Biochemical reaction networks are subjected to large fluctuations attributable to small
molecule numbers, yet underlie reliable biological functions. Thus, it is important to …

Monostability, bistability, periodicity and chaos in gene regulatory network

Q Lai, XW Zhao, JN Huang, VT Pham… - The European Physical …, 2018 - Springer
This letter gives a general review on the monostability, bistability, periodicity and chaos in
gene regulatory network. Some simple motifs that generate monostability, bistability …