[PDF][PDF] Towards dynamic genome-scale models

D Gilbert, M Heiner, Y Jayaweera… - Briefings in …, 2019 - academic.oup.com
The analysis of the dynamic behaviour of genome-scale models of metabolism (GEMs)
currently presents considerable challenges because of the difficulties of simulating such …

Ki MoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems

RS Costa, A Veríssimo, S Vinga - BMC systems biology, 2014 - Springer
Background The kinetic modeling of biological systems is mainly composed of three steps
that proceed iteratively: model building, simulation and analysis. In the first step, it is usually …

Performances evaluation and Petri nets

O Diallo, JJPC Rodrigues, M Sene - Modeling and Simulation of Computer …, 2015 - Elsevier
Petri nets have become a tremendously important mathematical and graphical tool in
modeling and performance evaluation of real systems with discrete events that are …

Formal verification confirms the role of p53 protein in cell fate decision mechanism

EA Mahmoud, M Herajy, IE Ziedan, HI Shehata - Theory in Biosciences, 2023 - Springer
The bio-cell cycle is controlled by a complex biochemical network of signaling pathways.
Modeling such challenging networks accurately is imperative for the understanding of their …

Integrative analysis of metabolic models–from structure to dynamics

A Hartmann, F Schreiber - Frontiers in bioengineering and …, 2015 - frontiersin.org
The characterization of biological systems with respect to their behavior and functionality
based on versatile biochemical interactions is a major challenge. To understand these …

Análisis estocástico de un sistema génico simple para la síntesis de una proteína implementando los métodos de Gillespie

DCC Buriticá, BVM Bohórquez… - Revista …, 2018 - revistas.juanncorpas.edu.co
En la mayoría de los casos en los que se requiere describir una red biológica se propone
un sistema de ecuaciones diferenciales acopladas, que luego se resuelve por métodos …

Improvement of KiMoSys framework for kinetic modelling

HDC Mochão - 2021 - run.unl.pt
Over the past years, an increasing amount of biological data produced shows the impor
tance of data repositories. The databases ensure an easier way to reuse and share research …

[PDF][PDF] Desenvolvimento de métodos de análises e integração de dados de ômicas aplicados à construção de leveduras industriais para produção de bioetanol de …

LM de Carvalho - 2019 - repositorio.unicamp.br
RESUMO O Brasil é um dos líderes mundiais na produção de etanol, sendo pioneiro no
ramo do álcool combustível. No entanto, o país já enfrenta uma grande limitação imposta …

[PDF][PDF] Integrative Analyse der Struktur und Dynamik metabolischer Modelle

A Frau Hartmann - opendata.uni-halle.de
Kurzdarstellung Die Charakterisierung von Verhaltens-und Funktionsweisen biologischer
Systeme stellt aufgrund vielfältiger biochemischer Interaktionen eine große …

[PDF][PDF] KiMoSys–data for KInetic MOdels of biological SYStems

R Costa - 2014 - sels.tecnico.ulisboa.pt
Kinetic modeling of biological systems is a fundamental element of systems biology as a tool
for performing experiments in silico with biotechnological and biomedical applications. It is …