Integrative single-cell analysis

T Stuart, R Satija - Nature reviews genetics, 2019 - nature.com
The recent maturation of single-cell RNA sequencing (scRNA-seq) technologies has
coincided with transformative new methods to profile genetic, epigenetic, spatial, proteomic …

Circuits and functions of the lateral habenula in health and in disease

H Hu, Y Cui, Y Yang - Nature Reviews Neuroscience, 2020 - nature.com
The past decade has witnessed exponentially growing interest in the lateral habenula (LHb)
owing to new discoveries relating to its critical role in regulating negatively motivated …

Challenges in unsupervised clustering of single-cell RNA-seq data

VY Kiselev, TS Andrews, M Hemberg - Nature Reviews Genetics, 2019 - nature.com
Single-cell RNA sequencing (scRNA-seq) allows researchers to collect large catalogues
detailing the transcriptomes of individual cells. Unsupervised clustering is of central …

[HTML][HTML] An atlas of cortical arealization identifies dynamic molecular signatures

A Bhaduri, C Sandoval-Espinosa, M Otero-Garcia, I Oh… - Nature, 2021 - nature.com
The human brain is subdivided into distinct anatomical structures, including the neocortex,
which in turn encompasses dozens of distinct specialized cortical areas. Early …

Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region

JR Moffitt, D Bambah-Mukku, SW Eichhorn, E Vaughn… - Science, 2018 - science.org
INTRODUCTION A mechanistic understanding of brain function requires the identification of
distinct cell types in the brain at a molecular, spatial, and functional level. The preoptic …

Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis

JA Farrell, Y Wang, SJ Riesenfeld, K Shekhar, A Regev… - Science, 2018 - science.org
INTRODUCTION During embryogenesis, pluripotent cells gradually become specialized
and acquire distinct functions and morphologies. Because much of the specification process …

Mouse retinal cell atlas: molecular identification of over sixty amacrine cell types

W Yan, MA Laboulaye, NM Tran… - Journal of …, 2020 - Soc Neuroscience
Amacrine cells (ACs) are a diverse class of interneurons that modulate input from
photoreceptors to retinal ganglion cells (RGCs), rendering each RGC type selectively …

Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain

B Raj, DE Wagner, A McKenna, S Pandey… - Nature …, 2018 - nature.com
The lineage relationships among the hundreds of cell types generated during development
are difficult to reconstruct. A recent method, GESTALT, used CRISPR–Cas9 barcode editing …

[PDF][PDF] Single-cell profiles of retinal ganglion cells differing in resilience to injury reveal neuroprotective genes

NM Tran, K Shekhar, IE Whitney, A Jacobi, I Benhar… - Neuron, 2019 - cell.com
Neuronal types in the central nervous system differ dramatically in their resilience to injury or
other insults. Here we studied the selective resilience of mouse retinal ganglion cells …

[PDF][PDF] Molecular classification and comparative taxonomics of foveal and peripheral cells in primate retina

YR Peng, K Shekhar, W Yan, D Herrmann… - Cell, 2019 - cell.com
High-acuity vision in primates, including humans, is mediated by a small central retinal
region called the fovea. As more accessible organisms lack a fovea, its specialized function …