The CRISPR tool kit for genome editing and beyond

M Adli - Nature communications, 2018 - nature.com
CRISPR is becoming an indispensable tool in biological research. Once known as the
bacterial immune system against invading viruses, the programmable capacity of the Cas9 …

Applications of CRISPR/Cas system to bacterial metabolic engineering

S Cho, J Shin, BK Cho - International journal of molecular sciences, 2018 - mdpi.com
The clustered regularly interspaced short palindromic repeats/CRISPR-associated
(CRISPR/Cas) adaptive immune system has been extensively used for gene editing …

Long-range gene regulation in hormone-dependent cancer

TT Tettey, L Rinaldi, GL Hager - Nature Reviews Cancer, 2023 - nature.com
The human genome is organized into multiple structural layers, ranging from chromosome
territories to progressively smaller substructures, such as topologically associating domains …

LADL: light-activated dynamic looping for endogenous gene expression control

JH Kim, M Rege, J Valeri, MC Dunagin, A Metzger… - Nature …, 2019 - nature.com
Mammalian genomes are folded into tens of thousands of long-range looping interactions.
The cause-and-effect relationship between looping and genome function is poorly …

The CRISPR/Cas revolution continues: from efficient gene editing for crop breeding to plant synthetic biology

J Kumlehn, J Pietralla, G Hensel… - Journal of Integrative …, 2018 - Wiley Online Library
Since the discovery that nucleases of the bacterial CRISPR (clustered regularly interspaced
palindromic repeat)‐associated (Cas) system can be used as easily programmable tools for …

Modulating gene regulation to treat genetic disorders

N Matharu, N Ahituv - Nature Reviews Drug Discovery, 2020 - nature.com
Over a thousand diseases are caused by mutations that alter gene expression levels. The
potential of nuclease-deficient zinc fingers, TALEs or CRISPR fusion systems to treat these …

Designing biological circuits: synthetic biology within the operon model and beyond

MA English, RV Gayet, JJ Collins - Annual Review of …, 2021 - annualreviews.org
In 1961, Jacob and Monod proposed the operon model of gene regulation. At the model's
core was the modular assembly of regulators, operators, and structural genes. To illustrate …

Epigenomics: technologies and applications

KC Wang, HY Chang - Circulation research, 2018 - Am Heart Assoc
The advent of high-throughput epigenome mapping technologies has ushered in a new era
of multiomics where powerful tools can now delineate and record different layers of genomic …

Engineering 3D genome organization

H Wang, M Han, LS Qi - Nature Reviews Genetics, 2021 - nature.com
Cancers and developmental disorders are associated with alterations in the 3D genome
architecture in space and time (the fourth dimension). Mammalian 3D genome organization …

A chromosomal loop anchor mediates bacterial genome organization

G Dugar, A Hofmann, DW Heermann, LW Hamoen - Nature genetics, 2022 - nature.com
Nucleoprotein complexes play an integral role in genome organization of both eukaryotes
and prokaryotes. Apart from their role in locally structuring and compacting DNA, several …