Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y Xia - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
Defining the human microbiome
Rapidly developing sequencing methods and analytical techniques are enhancing our
ability to understand the human microbiome, and, indeed, how the microbiome and its …
ability to understand the human microbiome, and, indeed, how the microbiome and its …
[图书][B] Environmental DNA: For biodiversity research and monitoring
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …
Updating the 97% identity threshold for 16S ribosomal RNA OTUs
RC Edgar - Bioinformatics, 2018 - academic.oup.com
Abstract Motivation The 16S ribosomal RNA (rRNA) gene is widely used to survey microbial
communities. Sequences are often clustered into Operational Taxonomic Units (OTUs) as …
communities. Sequences are often clustered into Operational Taxonomic Units (OTUs) as …
DADA2: High-resolution sample inference from Illumina amplicon data
We present the open-source software package DADA2 for modeling and correcting Illumina-
sequenced amplicon errors (https://github. com/benjjneb/dada2). DADA2 infers sample …
sequenced amplicon errors (https://github. com/benjjneb/dada2). DADA2 infers sample …
Minimum entropy decomposition: unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
AM Eren, HG Morrison, PJ Lescault… - The ISME …, 2015 - academic.oup.com
Molecular microbial ecology investigations often employ large marker gene datasets, for
example, ribosomal RNAs, to represent the occurrence of single-cell genomes in microbial …
example, ribosomal RNAs, to represent the occurrence of single-cell genomes in microbial …
[HTML][HTML] Faecalibacterium prausnitzii subspecies–level dysbiosis in the human gut microbiome underlying atopic dermatitis
Background Atopic dermatitis (AD) is a serious global epidemic associated with a modern
lifestyle. Objective Although aberrant interactions between gut microbes and the intestinal …
lifestyle. Objective Although aberrant interactions between gut microbes and the intestinal …
IMNGS: a comprehensive open resource of processed 16S rRNA microbial profiles for ecology and diversity studies
I Lagkouvardos, D Joseph, M Kapfhammer, S Giritli… - Scientific reports, 2016 - nature.com
Abstract The SRA (Sequence Read Archive) serves as primary depository for massive
amounts of Next Generation Sequencing data and currently host over 100,000 16S rRNA …
amounts of Next Generation Sequencing data and currently host over 100,000 16S rRNA …
OptiClust, an improved method for assigning amplicon-based sequence data to operational taxonomic units
SL Westcott, PD Schloss - MSphere, 2017 - Am Soc Microbiol
Assignment of 16S rRNA gene sequences to operational taxonomic units (OTUs) is a
computational bottleneck in the process of analyzing microbial communities. Although this …
computational bottleneck in the process of analyzing microbial communities. Although this …
A review of approaches and techniques used in aquatic contaminated sediments: metal removal and stabilization by chemical and biotechnological processes
The contamination of aquatic sediments with metals is a widespread environmental
problem. Coastal aquatic ecosystems with low hydrodynamics need to be periodically …
problem. Coastal aquatic ecosystems with low hydrodynamics need to be periodically …